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Hi, I am trying the snakemake with your example files , but I got the Error, could you share your help? Thanks
Config file config/example_config.yaml is extended by additional config specified via …
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Hi. Jody, we still got update_db Crash. See attached file.
[log.txt](https://github.com/user-attachments/files/17229972/log.txt)
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I am encountering an issue where deepmosaic-draw is not recognizing a valid input file. The command I am running is as follows:
singularity exec -B variant_calling/software/annovar/annovar:/mnt/ann…
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nucdiff formating of vcf variant files that are then "prepared" aka, fix the format, before annotation with vcf-annotator has "bugs"
This is fixed with prep_vcf_annotator.py
1. Adding info Colum…
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I Have a Bunch of CEL file (Affx) how to convert into vcf
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[GA00_AO2_BB1_01_annotsv_new.bed.zip](https://github.com/user-attachments/files/17144001/GA00_AO2_BB1_01_annotsv_new.bed.zip)
@lgmgeo Hello, I am trying to use the web version of annotsv, and I appr…
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When adding deletions, the VCF shows them as insertions.
REF and ALT are back to front?
CC: @kristyhoran
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Change gene.iobio to show variants and depth (from alignments) for genes on alternate contigs.
For example, gene GSTT1 for build GRCh38 (RefSeq transcripts), the app is not able to display variants…
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Hi,
I would like to know what the vcf requirements are? Can it be .gz? Should previously filtering for only biallelic loci be done? I get a core dumped error using a vcf.gz with 7 individuals for a …