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[this ticket may be moved to a different repo. A lot of the functionality is the same as geferencer so putting here for now]
given a list of taxa (species and intermediate nodes), pre-generate a ta…
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Hi there,
I am trying to build a reference with the D.melanogaster genome. I downloaded the fasta and .gtf files from the latest release in flybase (ftp://ftp.flybase.net/genomes/Drosophila_melano…
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Dear FALCON developers,
I am using the D. melanogaster dataset described in https://github.com/PacificBiosciences/DevNet/wiki/Drosophila-sequence-and-assembly as a test case to make sure FALCON and…
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Dear Dr. Mirarab,
I have successfully ran this code and think it's a great approach to species tree estimation. I did, however, noticed that once the super-genes are created, the names of the taxa in…
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Hi,
Could you share RcisTarget motif database on Fly. We are using latest Drosophila Melanogaster genome version 6 (BDGP). Ensembl 90.
Thanks in advance,
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Hello,
I am not sure these two paper show direct involvement of the proteins in transport:
* gb | genderblind | | L-glutamate transport | | FlyBase | Drosophila melanogaster | IMP | | …
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Hi,
I am trying to build the reference genome for drosophila by using cellranger mkref command. Please find below the commands used.
[sbhattach2@CRI-13-127 cellranger-2.1.0]$ sudo ./cellranger mkg…
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This is my sample script
#canu 1.7
canu \
-d N2_assembly_17 -p pacbio_N2_17 \
genomeSize=100m maxMemory=100g maxThreads=50 \
minReadLength=1000 minOverlapLength=500 corOutCoverage=1000 corMin…
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Hi,
I am trying to run mirmix on a list, rather small, of 3'UTR from the gene eve in different insects species. However I keep getting the same error and I cannot figure out what's the problem.
…
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I run the SalmonTE like this:
./SalmonTE.py quant --reference=hs ./example/CTRL_1_R1.fastq
and get error as below:
![image](https://user-images.githubusercontent.com/34944811/34442783-659b468…