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Hi,
I've installed MetAMOS and iMetAMOS on my linux box and tried to run the test pipleine (run_pipeline_test.sh) and got the following warnings and errors:
A few questions:
1) I HAVE definitely inst…
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Hi @jbenet and @maxogden! Thank you so much for the time you took to meet with @mlovci and me this weekend. Here's an overview of our current data management situation and what our ideal case would be…
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New Home: https://github.com/bxlab/galaxy_hackathon/issues/31
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I took a look at your project flowchart. Are you familiar with the Galaxy Project? Seems like it implements almost exactly this and has a pretty substantial buy in from various biology projects.
Gala…
ghost updated
8 years ago
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Can you check this?
I don't know what is the problem.
[nf.log.txt](https://github.com/nextflow-io/nextflow/files/360507/nf.log.txt)
hmkim updated
8 years ago
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Hello there,
This is Olga Botvinnik and Mike Lovci (@mlovci), PhD students in Bioinformatics-type fields at UC-San Diego working on a biological data analysis package for "large" (for biology) dataset…
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I get the following error on some fastq.gz inputs but not others. The error seems to be repeatable for a given input ie if it happens it always happens. The error is:
```
[M::mem_pestat] low and high…
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I've got a basic pass at persistent bash magics working based on bash_kernel.
Because of singletons, i had to make
BashKernel(object) and **init**(self, kernel, **kwargs)
Is there a better way to sha…
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What sure what is involved/required to support docker.
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When I run one of my CommandLineTools (which runs in a Docker container) using the "--outdir" flag, I can see that the output directory gets set correctly:
```
sudo cwl-runner --outdir /cwl-data/work…