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it seems the default value is -1 for --threads, So, How many Threads started in the running?
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Hi，
When i want to Generate user-specific custom database, I just find some example like user_complex.csv. I can not find the example file of your_custom_interaction_file.csv. Is there a format o…
nkm47 updated
4 years ago
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Hi,
I just noticed that when plotting the heatmap the number of interactions in the "count_network.tsv" ("--count-network-name") are not correct, as the (significant) interactions of A -> B and B -…
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Could I please ask if OmnipathR provides access to a list of gene pairs?
That is, I would like to get a dataframe where each row corresponds to a pair of genes (or proteins), e.g., *CXCL10* and *CX…
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Hi, I just found that some interactions were that ligand come first and receptor come back ,like IGF1_IGF1R,and some interactions were opposite, like EGFR_EGF. when I split all clusters' interaction b…
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https://mp.weixin.qq.com/s/0NbOjNKEN_sizlofclHA4w
ixxmu updated
2 years ago
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Hi I'm using Python 3.7.3 and encountered the following error message when installing cellphonedb:
ERROR: Command errored out with exit status 1:
command: 'c:\users\tantzeg\cpdb-venv\scripts\p…
tgtan updated
3 years ago
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Hi,
I have downloaded CellPhoneDB 2.1.4, and try to run the pacakage, but I get the following error.
command line: /work1/software/x86_64.1/cellphonedb/2.1.4/bin/cellphonedb
Error 👍
/work1/sof…
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This example is based on legacy code but I think the issue is unrelated to that.
Among pathway datasets
'trip', 'spike', 'signalink3', 'guide2pharma', 'ca1', 'arn', 'nrf2', 'macrophage', 'deat…
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Hi there!
I found your manuscript and the database you've designed to be truly amazing!
I'm however confused. Is the current database available only for human data? One should build a similar d…