-
Hi,
Thanks for this beautiful package.
I am wondering if it is suitable to use the MAGIC_RNA assay for ligand receptor pair analysis, for example using the CellphoneDB package.
Thanks,
Lutian…
-
How to calculate the forceNetwork between cells based on the results of cellphonedb
-
Hi,all
I have used the cellphonedb and I think it is a great tool!
But I have some question about the cellphonedb.
1, How do you use the permutation test to calculate the significant intercellular…
-
**Describe the bug**
This is a follow-up to #152.
Cannot see the graph of combined *pathway* resources.
**To Reproduce**
```
from os import devnull
from pypath.legacy.main import PyPath
from…
-
Hi ,
Thank you very much for this package. After converting my anndata (scanpy) to the count file and meta file using your script @ https://www.cellphonedb.org/faq-and-troubleshooting I then run cell…
-
**It's my first time to use cellphonedb. I have no problem using cellphonedb method.
While I was using cellphonedb plot with the code "cellphonedb plot dot-plot "
It showed errors as follows:**
…
-
Hi,
when I run the statistical analysis in cellphonedb, I get the following error message: **Result is empty**. My data comes from an anndata object out of scanpy. Many thanks in advance for your hel…
-
Nice work!
Recently I read a paper which uses cellphonedb in its analysis (https://doi.org/10.1038/
s41591-019-0468-5) to compare the different interactions between the two groups. In the paper, mul…
-
Hi,
I've recently started scRNA analysis and am learning to use RStudio.
I was wondering if its possible // how to use this package in RStudio?
I do have the 'reticulate' package installed, but I…
-
“Setup the Seurat objects” description for Seurat v3.0 https://satijalab.org/seurat/v3.0/immune_alignment.html
slightly differs from Seurat v3.1 https://satijalab.org/seurat/v3.1/immune_alignment.htm…