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Loading internally generated h5ad into excellxgene results in error in the log:
```
ERROR:backend.server.app.app:Exception on /api/v0.2/layout/obs [GET]
TypeError: '(slice(None, None, None), slic…
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@multimeric I was of the impression that the data loaded was sparse, but appers to be double.
```r
get_metadata() |> head(1) |> get_single_cell_experiment(cache_directory = "/vast/projects/cellxge…
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## Need
when a user download the library they need to get the latest data before it can be used. The library should download it automatically. They should also be able to pin to a specific version of…
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I tried to add `--multi_gpu` for `eval_single_anndata.py`, but an error jumps out:
```
Using sample 4 layer model
generalization_splitted_cellxgene_leave_out_122123_134708_valid_celltype_adata_uce …
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Hi,
I am trying to setup VIP for a large group of users and in order to not overwhelm them and keeping our server resources in check, I wanted to only enable a few selected visualization features i…
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## Approach
- [ ] remove [compute_tissue_and_cell_type_mappings.py](https://github.com/chanzuckerberg/single-cell-curation/blob/main/scripts/compute_mappings/compute_tissue_and_cell_type_mappings.p…
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## Describe the bug
When I try to extract an AnnData from CELLxGENE census using the Python interface, the process runs out of memory (>200GB) and crashes.
## To Reproduce
The following scrip…
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### Project short name:
CREDiseaseRetina
### Primary Wrangler:
Ida
### Secondary Wrangler:
Arsenios
### Associated files
* Google Drive: [folder](https://drive.google.com/drive/folders/1N8KJ4_LEYB…
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## Describe the Bug
The set of orphan tissues (`orphan_tissues`) defined in [compute_tissue_and_cell_type_mappings](https://github.com/chanzuckerberg/single-cell-curation/blob/main/scripts/compute_…