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def prepare_data(data_platform: str = "10XVisium", sample_number: int = 151507, split_number: int = 0, \
preprocessed: bool = True, impute_gene_type: str = "all", \
…
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When I run tnode.train(), an error message appears as follows:
RuntimeError: mat1 and mat2 must have the same dtype, but got Double and Float
The following is the code before the error occurs:
…
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Hi
Sorry, I'm unfamiliar with converting between MuData and R format.
I am unable to load my h5mu data in. I keep getting "Error in h5checktype(). The provided H5Identifier is not a dataset ide…
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Hello,
I'm having an issue that is quite difficult to reproduce. Sometimes when I run the deconvolution, I just get an empty file, as follows:
![image](https://user-images.githubusercontent.com/…
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Hi I was trying to replicate your Immune_All_Low model by using the same training dataset that you kindly provided (CellTypist_Immune_Reference_v2_count). I tested the two models (original and the rep…
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Why do I get this error message when running generate_gold_standart?
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I am encountering a RuntimeError related to mismatched tensor devices during training when using scnym_api with GPU. The error occurs when indexing tensors during the training process, and it seems li…
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**My code**
# Run the CELLxGENE annotate command
!cellxgene annotate adata_query.h5ad \
--model-url https://datasets.cellxgene.cziscience.com/8674c375-ae3a-433c-97de-3c56cf8f7304.h5ad\
-…
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- [x] I have confirmed this bug exists on the latest version of cell2location. See https://github.com/BayraktarLab/cell2location#installation
- [x] I follow the instructions from the [scvi-tools tuto…
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```
import scanpy as sc
import anndata
import time
import os,wget
import cudf
import cupy as cp
from cuml.decomposition import PCA
from cuml.manifold import TSNE
from cuml.cluster import KMea…