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NVIDIA-Genomics-Research
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rapids-single-cell-examples
Examples of single-cell genomic analysis accelerated with RAPIDS
Apache License 2.0
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weird UMAP results and very inconsistent with CPU results
#120
yubin-ai
opened
5 months ago
1
cell number limit: data point for 10M and 70M dataset
#119
yubin-ai
opened
9 months ago
0
gpu memory issue - 8M cell 24G GPU out of memory during umap
#118
yubin-ai
opened
10 months ago
1
change of cuml library
#117
yubin-ai
opened
10 months ago
0
Illegal Memory Access: 1.3M cells RTX A6000 48GB out of memory on scaling step
#116
jyuan-sd
closed
1 year ago
1
ImportError: /usr/lib/x86_64-linux-gnu/libcuda.so.1: file too short
#115
hyjforesight
opened
1 year ago
1
Updating coverage.py
#114
cjnolet
closed
1 year ago
0
Updating conda to pull from my rapidgenomics fork
#113
cjnolet
closed
1 year ago
0
iUpdating dockerfile
#112
cjnolet
closed
1 year ago
0
fix `rapids_scanpy_funcs.highly_variable_genes`
#111
hw-ju
opened
1 year ago
0
can't run inference with atacworks pretrained model within the container on A100
#110
hw-ju
opened
1 year ago
0
jupyter notebooks difference between in the repo and within docker container
#109
hw-ju
opened
1 year ago
0
TypeError: rank_genes_groups() got multiple values for argument 'groups'
#108
archieandrews10
opened
1 year ago
0
rank_gene_group_fix for rapids-23.02
#107
Intron7
closed
1 year ago
0
Adding zenodo DOI
#106
cjnolet
closed
1 year ago
0
updated and fixed rank_gene_groups
#105
Intron7
closed
1 year ago
1
scanpy_funcs: Use multi-target regression
#104
ahendriksen
closed
1 year ago
14
Cannot open UCX library: (null) in PCA analysis of 1M_brain_gpu_analysis_multigpu
#103
ChenPeizhan
opened
1 year ago
3
error of read_with_filter function
#102
111kakaluote
opened
1 year ago
0
The results consistency of RAPIDS implementation
#101
111kakaluote
opened
1 year ago
0
RuntimeError: exception occured! when analysis using multigpu
#100
111kakaluote
opened
1 year ago
2
MultiGPU notebooks calculated differentially expressed PCAs
#99
Intron7
closed
1 year ago
1
Updating for rapids 22.08
#98
cjnolet
closed
1 year ago
1
error in rapids_scanpy_funcs.highly_variable_genes
#97
Wulin-Tan
opened
1 year ago
5
Residual GPU Memory usage
#96
r614
opened
1 year ago
3
Getting a scalar from an IntervalIndex is not yet supported
#95
animesh
opened
1 year ago
0
csr_matrix with the .get method will return "Last value of index pointer should be less than the size of index and data arrays"
#94
linmuchuiyang
opened
2 years ago
3
conda import environment not working
#93
tnnandi
opened
2 years ago
1
update citation to preprint
#92
avantikalal
closed
2 years ago
0
Updating dockerfile for 22.02
#91
cjnolet
closed
2 years ago
0
Updates for RAPIDS 22.02 and scanpy 1.9.1
#90
cjnolet
closed
2 years ago
1
rapids for pyscenic
#89
Wulin-Tan
opened
2 years ago
0
Fix preprocess batch
#88
avantikalal
closed
2 years ago
0
Bug in preprocess_in_batches
#87
avantikalal
closed
2 years ago
0
rank_genes_groups fix
#86
Intron7
closed
1 year ago
2
Update rapids 21.12
#85
Intron7
closed
2 years ago
0
Updates for rapids 21.12
#84
cjnolet
closed
2 years ago
9
[REVIEW] Using multi-gpu PCA, kmeans, and UMAP
#83
cjnolet
closed
2 years ago
0
[REVIEW] Multi gpu
#82
cjnolet
closed
2 years ago
3
Change to scripts for upgrading to RAPIDS 2021.08...
#81
rilango
closed
2 years ago
2
Adding branch modified for dataproc users [DO NOT MERGE]
#80
bradmiro
closed
2 years ago
1
21.06 upgrade + benchmarks
#79
avantikalal
closed
2 years ago
0
Updating notebooks and conda environments for RAPIDS release 21.08
#78
cjnolet
closed
2 years ago
5
Alal/single gpu batching
#77
avantikalal
closed
2 years ago
0
Update rapids_scanpy_funcs.py to work with new scanpy version and rapids-0.19
#76
Intron7
closed
2 years ago
0
Batched preprocessing for 1M cell notebook...
#75
rilango
closed
2 years ago
5
added new features and functionalities
#74
Intron7
closed
2 years ago
2
CUDARuntimeError in Notebooks
#73
Intron7
closed
11 months ago
15
Nearest neighbors graph computation crashes
#72
manock
opened
3 years ago
1
Added Resolution for Leiden Function
#71
Intron7
closed
3 years ago
0
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