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### Description of bug
Hello,
I am trying to use spades for a metagenomic project. I have forward and reverse reads that input into SPAdes after using trimmomatic to trim. Sadly, SPAdes keeps fill…
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**Submitting author:** @tongzhouxu (Tongzhou Xu)
**Repository:** https://github.com/tongzhouxu/mashpit
**Branch with paper.md** (empty if default branch):
**Version:** v0.9.7
**Editor:** @csoneson
**…
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## Short description of the problem
The recently introduced `--prodigal-single-mode` flag from https://github.com/merenlab/anvio/commit/f1291f755c859d55f8152321942f5a62b384676b causes workflows to …
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### Description of the bug
Dears,
I was trying to run the setup mode but I am getting the same error about singularity even changing some flags
* I also have set `NXF_SINGULARITY_CACHEDIR` as a v…
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Goal: compare the performance (in terms of accuracy, speed, and RAM usage) of the MinDivLP approach, and a standard QIIME2 workflow.
- [x] Familiarize yourself with [QIIME2](https://qiime2.org/) an…
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Thanks for your work on this promising tool! In regards to its applications to metagenomics, can radEmu handle length normalized data as input? In metagenomics, it is common to normalize counts to the…
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Análisis metagenómico de silaes de Agave salmiana
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Hi,
I am new to Eggnog-Mapper and barely have experience on using Python. Previously I attempted to install it on Windows computer but failed to run it for some problems that I had no idea how to…
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### Description of bug
spades -1 '/home/hungluong/20240905_prrsv_illumina/final5/209656_R1.fastq.gz' -2 '/home/hungluong/20240905_prrsv_illumina/final5/209656_R2.fastq.gz' -o test209656_0912_spade
C…
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Data Portal visualizations and custom data exploration
The Data Portal currently displays visualizations to guide the user to samples of interest. These
visualizations were created due to input for th…