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Good day everyone.
9 new sequences of a BA.2 strain were detected. Samples were collected between September and November 2023 from Gauteng, Mpumalanga and Limpopo, South Africa. NextClade assigns …
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I require SRA Normalized Format files containing complete base quality scores for my analysis. However, the "prefetch" command downloads only the lite version for certain #SRR numbers, despite using p…
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Hi,
I found slamdunk snp(varscan2) missing SNPs around INDEL(SNP-INDEL), and it seems to cause false positive, such as:
my mpileup file (use slamdunk snp argument create):
> chr4 5742730 T …
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Hi,
thanks for developing ffq. It has been really helpful so far!
However, it doesn't seem to work anymore. The following command line used to output something and I'm now getting an error messa…
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Hello, I created a .txt with all my .fastq files and analyzed them using:
`bactopia --fastqs R_fastqFOFN.txt --datasets /home/elliston/Documents/karim/bactopia/R_fastq_bactopia/datasets/
`
This ran…
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Hello,
I am trying to run pysradb to retrieve the metadata for the study [PRJEB55296](https://www.ebi.ac.uk/ena/browser/view/PRJEB55296). As you can see, the study has 670 run accessions.
Howe…
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### Version
1
### DataCap Applicant
Joyce
### Project ID
1
### Data Owner Name
X-Bug | The Rieseberg Lab at the University of British Columbia
### Data Owner Country/Region
…
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Hi,
I'm having an issue probably related to #621, but with FASTQ files instead. I'm trying to run BRAKER on local FASTQ files, but BRAKER seems to insist on downloading SRA files.
The stderr giv…
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https://mp.weixin.qq.com/s/VAN63oldr5g0YQPSZ8IuiQ
ixxmu updated
3 months ago
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I have been trying to assemble a 10Mb genome with uncorrected nanopore data (3-4 chromosomes expected). We have a lot of data, is that the reason Flye fails at the end?
[2019-06-22 11:00:05] INFO: …