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Hello !
I am working with mouse methylation beadchips (MM285) and am having trouble to annotate my probes with genetic locations.
I read that I needed to use the `attachManifest()` function but it d…
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> sessionInfo()
R version 3.5.2 (2018-12-20)
Platform: x86_64-w64-mingw32/x64 (64-bit)
Running under: Windows 10 x64 (build 17763)
Matrix products: default
locale:
[1] LC_COLLATE=Korean_Kore…
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I am not able to reproduce the tutorial example with last scde version from bioconductor. About one week ago it was working fine.
```
# load example dataset
data(es.mef.small)
# factor deter…
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I'm coming across a problem while trying to analyze WGBS data from CD4 and CD8 T cells (3 vs 3 samples). I used the following code:
```
bsseq_obj = BSseq(chr = chr, pos = position, M = M, Cov = C…
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Autoplot only display gray color for confidence intervals,which is not same as the example.
![image](https://github.com/mlr-org/mlr3viz/assets/44562411/492f27bd-ac19-4456-8b17-0fb9f0aad163)
![imag…
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Hi Muscat team,
I am trying to simulate a dataset, and when I try prepSim, this error occurs:
```
> > ref Argument `group_keep` unspecified; defaulting to retaining “Healthy”-group samples.
> F…
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Running `npm install` creates a Stripe error:
```cmd
npm error code ERESOLVE
npm error ERESOLVE unable to resolve dependency tree
npm error
npm error While resolving: frontend@0.1.0
npm error …
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Hi Guangchuang,
I found `enrichKEGG` returned different results in different R sessions. It's strange, and I don't know why.
Test 1, no enrichment was found:
```R
> head(DE_genes2)
…
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Hello,
I am having trouble using your YAML file to create the extension. According to [this thread](https://stackoverflow.com/questions/56889159/creating-conda-env-from-yml-packages-doesnt-download…
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Hi,
I tried to use fastMNN to correct batch effects, and the codes were as follows,
Cause I used seurat for processing the data, so I merge the data using seurat and transform into singlecellexperim…