hms-dbmi scde issues - Githubissues

hms-dbmi / scde

R package for analyzing single-cell RNA-seq data

http://pklab.med.harvard.edu/scde

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issues

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could scde use in differencial expression transcripts analysis?

#92 DamienTan opened 2 years ago
0
Trouble installing scde

#91 airfan0 closed 2 years ago
0
ERROR encountered in building a model

#90 ps120195 opened 2 years ago
0
error in calculating models

#89 jingjiai opened 2 years ago
0
scde issue

#88 mark0237 opened 3 years ago
3
ES/MEF cell dataset published by Islam et al

#87 dalibor49 opened 3 years ago
0
fisher.test error

#86 marctormo opened 4 years ago
0
Question regarding line 138 in jpmatLogBoot.cpp

#85 bio-info-guy closed 4 years ago
0
How to get the baseMeanA and baseMeanB in result of scde.expression.difference()

#84 lyqbiocc opened 4 years ago
0
Naive questions

#83 brianlamx opened 4 years ago
0
last biocoductor version

#82 dibbelab opened 4 years ago
4
Is there an equivalent pagoda.show.pathways() function for looking at clusters and not pathways

#81 jpcartailler opened 4 years ago
0
i could not install scde

#80 woshiyangsi closed 4 years ago
1
What is the meaning of zscore in the results of differentially expressed analysis?

#79 AIBio opened 4 years ago
4
scDE is too slow when running large scale datasets.

#78 iyhaoo closed 5 years ago
1
Fail to run scde.error.models using example dataset

#77 biowilliam closed 5 years ago
3
scde bioconductor version 2.10.0 still has flexmix problem!

#76 tanpuekai opened 5 years ago
2
Computing the statistical significance of overdispersion

#75 livnatje opened 5 years ago
0
Error in checkSlotAssignment(object, name, value)

#74 mirauta opened 5 years ago
2
incredible difficulty in installing 'scde' on R3.4.3 and R3.5.1

#73 tanpuekai opened 5 years ago
2
using 10x data

#72 batis2ta opened 5 years ago
0
Cannot install scde in windows

#71 alyosama opened 5 years ago
0
Error in t.default(pmat1) : argument is not a matrix

#70 YingMa0107 closed 5 years ago
1
Differing Results in SCDE Tutorial

#69 adamclemmitt closed 5 years ago
1
regressing out confounders for differential expression

#68 livnatje opened 6 years ago
0
Normalized expression

#67 livnatje opened 6 years ago
0
Up- and down-regulated genes from which of the two groups?

#66 mvalenzuelav opened 6 years ago
2
Effect Size or LogFC

#65 ghost opened 6 years ago
3
scde.browse.diffexp shows a blank webpage

#64 DesmondYuan closed 6 years ago
0
Memory requirement

#63 DesmondYuan opened 6 years ago
1
cde.error.models in batch

#62 ghost opened 6 years ago
2
scde.expression.difference outputs when batch defined

#61 ghost opened 6 years ago
1
Error in scde.error.models

#60 ghost closed 6 years ago
0
Document installation of flexmix 2.3-13.

#59 jdblischak closed 6 years ago
0
Install flexmix 2.3-13 for Travis build.

#58 jdblischak closed 6 years ago
1
Correspondence between GitHub and Bioconductor verison numbers

#57 jdblischak opened 6 years ago
1
Pin flexmix to 2.3-13.

#56 jdblischak closed 6 years ago
0
Problem running scde on linux cluster. Fortran "dqrls" not resolved

#55 FloWuenne closed 12 months ago
8
How to load 10x data (.tsv files) into scde?

#54 rgupta122 closed 5 years ago
1
ERROR in PAGODA

#53 livnatje opened 6 years ago
0
The meaning of each column in scde results.

#52 J-sara opened 6 years ago
0
error modeling knn takes up all cores

#51 dtm2117 opened 6 years ago
9
Significant corrected Z-score?

#50 livnatje closed 6 years ago
3
Error in pagoda.pathway.wPCA: results not reproducible, even with seed

#49 aparna-arr opened 6 years ago
0
Error in FUN(X[[i]], ...)

#48 xuesongjing opened 7 years ago
17
Error in pagoda.cluster.cells

#47 Noodlotje opened 7 years ago
0
knn.error.models fails - compatibility problem?

#46 bobermayer closed 7 years ago
1
use AnnotationDbi::select

#45 slowkow closed 7 years ago
0
Error in checkSlotAssignment(object, name, value)

#44 xuesongjing closed 6 years ago
2
Invalid row.names length error in error models

#43 djchin25 opened 7 years ago
2