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Thank you for creating this valuable tool. We've found it to be the best for analyzing our data compared to other tools, but we've noticed a discrepancy in genotyping the KIR2DL5A/B genes. While other…
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* **Do you want to request a *feature* or report a *bug*?**
feature
* **What is the current behavior?**
reporter.BadOutsideCallException when outside CYP2D6 genotype call is an invalid fo…
songx updated
2 months ago
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TODO: explore whether it makes sense to
1. name a shortcut relation for all association path
2. extend OBAN model to allow the relation to be a list (interpreted as a chain)
Tending towards …
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Hi
I have a pangenome graph with 5 genomes generated from minigraph-cactus.
I'm currently indexing with autoindex to use mpmap and rpvg.
When aligning RNA-seq reads should I align each set of…
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Hi,
Very powerful tool
When I use igv, I often need to cluster the same bases together for display. Are there any relevant settings that can achieve similar functions?
Thanks
![image](https://gi…
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https://bioentity.link//#/publication/10.1093/g3journal/jkae064
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I've run mmseq on a diploid transcriptome that includes for example ENST00000052754.10_A (paternal transcript) and ENST00000052754.10_B (maternal transcript) in the results (.mmseq file). I want to us…
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#### Introduction
I am a new PhD Student at the Walter and Eliza Hall institute in Melbourne, Australia. My project is based around methods and tools for the analysis of DNA methylation in long reads…
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If I have two nearby unphased indel variants it is unclear how they are supposed to be normalised.
Following https://vrs.ga4gh.org/en/stable/impl-guide/normalization.html, I get to the step 3a:
`i…
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This should be automated somehow. All new interaction annotations will come from Canto. That may help as those annotations always have dates attached.
Original comment by: kimrutherford