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Hello Alex, I have paired-end rna-seq of 50 samples of human. I have already done the mapping using STAR and the reference file that mentioned in the documentation (https://github.com/alexdobin/STAR/b…
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First step is to figure out which services are offered for each provider. We should look at each product as well, in case the analysis services also differ by product.
- [ ] Nebula Genomics
- [x] …
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Hello,
I'm trying to train a neutral model that I will then use to estimate PhyloP scores on my model species (Hirundo rustica), which is one of the species included in my HAL alignment generated w…
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Hi,
I am working on variant analysis of organelle genome but I could not make sure If I use my output files in SNPRelate for this purporse. Because method parameter in "snpgdsVCF2GDS_R" function is…
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It would be nice to have a field that creates a jbrowse link on specific organism and genome assembly (project-based or analysis-based). It would need to point to a different JBrowse for each page.
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Dear developers,
Many thanks to your group for providing such excellent tool for RNA-seq analysis. Here i have a question that have confused me quite a while.
I created two versions of genome i…
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Hi,
Thank you for developing such a wonderful tool!
I am currently looking to utilize the existing CNV profile via the `segs_consensus_fix `parameter to establish definitive CNV boundaries and stat…
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hi, there, I performed genome survey using HiFi reads. And my command as follows:
kmc -k27 -m24 -cs10000 pigweed.HiFi.fq.gz pigweed ./
kmc_tools transform pigweed histogram pigweed.histo -cx10000…
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Hi,
I am able to run 30 samples with no errors. However, about 5 additional samples get stalled, meaning VEP is running indefinitely with no error.
It turns out that all 5 samples have large RE…
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When trying to do the Alignment step of the reads against the reference I executed first:
> baga/baga_cli.py Dependencies --checkgetfor AlignReads
And all the dependencies were installed and found c…