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We need to update the Jenkinsfile command to remove the `--update-buckets` flag
Also, there's an error coming up while copying files:
```
| [47/47 files][ 1.3 GiB/ 1.3 GiB] 100% Done
Operati…
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We need to copy the date labeled release directory to
gs://monarch-archive/monarch-kg-dev/
gs://data-public-monarchinitiative/monarch-kg-dev/
and we need to replace/update gs://data-public-mon…
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## Overview
Due to a library we're using, we didn't realize that we had a `PosixPath` that we were trying to pass to SchemaView; we thought it was just `str`. However, SchemaView is not set up curren…
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### Describe the desired behavior
Orphanet and OMIM data currently come from Monarch data archives, but they use n-tuples.
These aren't being actively updated.
Instead, do one or more of the foll…
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We need to run the directory indexer script from https://github.com/monarch-initiative/monarch-file-server/tree/main/scripts after we add files to the public data bucket.
It might be enough to upd…
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I have downloaded the gnomad.genomes.r3.0.indel.tsv and gnomad.genomes.r3.0.indel.tsv.gz.tbi in my examiner folder and I gave the path in applications.properties as examiner-cli-12.1.0/data/2102_hg38/…
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- [ ] Make sure the downloads.yaml has everything we need
- [ ] Make sure the CLI works
- [ ] Add a Jenkinsfile and new job to download, generate mappings and upload
We should maybe use 'gene-ma…
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@sabrinatoro when you have a chance, could you please do a query for the list of rare diseases in Mondo and share it with Gioconda? (See email)
Thanks!
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Predator prey links could be pulled out of VertNet.org. The DynamicProperties field of the Darwin Core often contains a phrase "stomach contents:" or "stomach contents=" followed by prey items.
I ass…
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**Please describe your question, suggestion, or concern.**
I noticed by chance the Monarch now imports pombe genes.
https://monarchinitiative.org/gene/NCBIGene:2543177#phenotype
However, the ph…