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Hi,
Firstly, thanks for the great tool, it's very helpful in choosing the cutoff parameters for DADA2.
I have a dataset which was very deeply sequenced and as far as I can tell the reads are no…
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My understanding is that currently BURST can only take in reads as an unzipped Fasta file. I am wondering if taking reads from standard input might be implemented at some point. Here are two use cases…
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Thank you for developing the Cyanoseq database, which is very helpful for aquatic microbial research. I want to use Cyanoseq database on my 16S rRNA gene amplicon sequencing data. I downloaded CyanoSe…
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Hey, thanks a lot for building such an amazing tool with great documentation.
I was using the tool using the following command and it seems to fail while running Emirge. I could not debug the problem…
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### R code from [EBI Metagenomics workshop 2021 - MGnifyR](https://beadyallen.github.io/MGnifyR/Exercises.html)
```
# installation
if (!require("BioCManager", quietly = TRUE))
install.packages…
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Hi all, @FelixKrueger @ewels
I tried to run the pipeline with some data, but I had no idea about how they have been produced. I know just that they are methylation data. SO when fastqc run, I saw …
ewels updated
5 years ago
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## Paste the link of the GitHub organisation below and submit
https://github.com/nanoporetech
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### Description of feature
## Idea
454 sequencing is probably not as much used for amplicon sequencing as Illumina MiSeq nowadays, but it was popular some time ago and is still used. It would be g…
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Hi,
I am really struggling with convector. I try to launch pipeline.py but results me in some errors so I tried a step by step procedure. I have a folder of BAM files and a .bed file correctly format…
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I am using a Linux (ubuntu 20.04) operating system from Azure.
I have updated the conda version to the latest.
However, I am unable to download QIIME2 using this line of code `conda env create -n…