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I have CyTOF data from multiple batches without a batch control, and I am struggling to find a good way to perform batch correction. SAUCIE appears to be good, based on the paper published by its deve…
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This is to be able to more easily associate logs with a specific run
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I use scMerge2 to integrate about 150K cells.
Now, it costed about 5 hours and still run the "Running RUV" step with 120 CPU.
I wonder how to accelarate the process like your paper mentioned?
Thank…
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Thank you for providing the excellent tool. I tried to use HG002 HiFi and ONT long reads for running SVDSS. Although SVDSS output a complete set of SVs when using HiFi reads, SVDSS using ONT reads res…
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Is it possible to obtain batch normalized proportions using the propeller package? I have multiple samples from 5 different studies which are integrated using scvi. I would like to perform de novo clu…
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Hi team,
I found your isonform output fasta file is not a standard format with `>` line as header. And there are lots of empty files in the isonform fodler such as
```
(base) [yan.a@vc7-shared i…
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Below is a basic scenario in our release process:
![image](https://user-images.githubusercontent.com/19920146/233246072-61fee206-232d-4b88-9f2a-0c3c60e196ba.png)
A `fort pod` means the first mac…
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```ruby
org2m
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**Describe the enhancement:**
In this discussion thread: https://discuss.elastic.co/t/fix-to-libbeats-to-split-bulk-requests-which-are-too-large-not-working-in-elastic-agent-8-9-0/342136
I raise…
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Would be massively helpful for further subdividing work on a cluster (eg., for each interval, import multiple batches simultaneously in different processes, then merge at the end).