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When i run “python temp/VirRep/src/VirRep.py -i ~/virus3/seq/no_duplicates5_6.fasta -o temp/VirRep/vr -l 5000 -m temp/VirRep/src/model/VirRep.pth --use-amp --conservative --cpu-threads 8”. An error oc…
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```
What steps will reproduce the problem?
1. Deploy InterproScan 5.8
2. Adjust the qsub commands (following the faq)
3. Run...
What is the expected output? What do you see instead?
When the master i…
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Hi everyone,
first of all, thanks for your help and providing such an useful tool!
**Describe the bug**
When trying to use NextDenovo with my data, less than 1 second after starting to run it, …
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## Description
Since we have no bioinformaticians willing or able to work on QC within the microSALT and Mutant code i suggest doing it in cg.
## Suggested solution
To remedy the lack of QC w…
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Hello @dportik ,
The HiFi-MAG pipeline was running but shut down with the following error:
And the error is in rule Checkm2ContigAnalysis:
```
Config file config.yaml is extended by additional con…
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```
What steps will reproduce the problem?
1. Deploy InterproScan 5.8
2. Adjust the qsub commands (following the faq)
3. Run...
What is the expected output? What do you see instead?
When the master i…
-
Hi,
I tried nail after installing from cargo, running in a conda env with hmmer 3.4 and mmseqs2 15.6f452, but ran into this. Any ideas? I created the .sto with mafft and seqmagick.
Small input d…
wwood updated
5 months ago
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Hi, I encountered a issue when preparing the input data. I have a integrated anndata with counts but several samples lacked the features.tsv.gz, bacordes.tsv.gz, and matrix.mtx.gz files. Could the SEV…
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Sam worked on this before leaving, but I don't see it in any branches here
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### What tool are you looking for and why?
https://github.com/HKU-BAL/Clair3
variant caller for nanopore data. They provide a dockerfile and pre-built images on dockerhub but may be useful to add …