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`vt` is a tool set for short variant discovery in genetic sequence data.
[Here](https://github.com/atks/vt) is the official GitHub repository.
A good practice when run `platypus` is to add a `vt` st…
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1. the same mutaions have two different rsID in hg19_avsnp150.txt. for example:
1 10352 10352 T TA rs145072688
1 10352 10352 T TA rs555500075
2. I search …
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Hi
when i run programming,error occur. could you tell me why?
qpipeline tabix -m 2021 -d /mnt/sdb/ISOWN1/ISOWN/external_databases/COSMIC_v69.vcf.gz -A -E -p COSMIC_v69 -i test.vcf.temp.annovar…
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Hi Fritz,
I found another tool of you which looks useful... so here I am :)
When I annotate using a gzipped gff I get (quickly) the following output:
```
INITIALIZE VCF:
Parse VCF: 0
Parse …
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### Description
- [x] Platform information (e.g. Ubuntu Linux 16.04): Ubuntu Linux 18.04 LTS
- [x] OS architecture (e.g. amd64): amd64
- [x] pyenv version: 1.2.4
- [x] Python version: system versi…
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**[Original report](https://bitbucket.org/whatshap/whatshap/issue/145) by christos (Bitbucket: [proukakis](https://bitbucket.org/proukakis), GitHub: [proukakis](https://github.com/proukakis)).**
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Hi,when I run the example in config.ini with this command:
python InterVar.py -c config.ini
I got the following error. The version of python and ANNOVAR on my computer are 3.5.2 and 2017-07-17 resp…
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Hi
I am getting this error when I am running the program with and without the annovar
Traceback (most recent call last):
File "Intervar.py", line 2051, in
main()
File "Intervar.py", …
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STEP 6 is to Annotate Variants
Here is the preliminary pipeline:
First, download ANNOVAR and associated databases
Instructions here: http://annovar.openbioinformatics.org/en/latest/user-guide/…
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/SYSMED/SEQprocess
Confirm the following by editin…
hgwoo updated
6 years ago