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Thank you for curating a list of protein receptor-ligand interactions, very helpful!
I noticed that the majority of interactions are listed as LIGAND_RECEPTOR in the database, but every now and the…
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I get this error. My input is Ensembl gene IDs, and I've sorted my data to only include genes in ~/CELLECT/data/shared/gene_coordinates.GRCh37.ensembl_v91.txt. Can you help me?
(base) ➜ CELLECT gi…
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Hi!
Awesome software! Thank you!
I was wondering what is the format of the output gene name. I noticed that some are gene symbols some are not (i.e. FcRn complex)
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I really like the paper and this solution that you have done.
I found a discrepancy between the 'Readme.md' file, documentation (https://www.cellphonedb.org/documentation) and the code regarding the …
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When the meta and counts file have cell labels that are integers e.g. range(0, 2535), I get the following error:
[ERROR] Invalid Counts data: Some cells in meta didnt exist in counts columns. Maybe…
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Hi,
thanks for the great and very useful tool!
However, I have a problem when I try to generate the heatmap_plot. I get the following error:
> Error: Missing argument "meta-path".
Thanks f…
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Hi Everyone,
I am using PyPath dev version 0.8.20 under python 3.6.
I have pickled annotation, however when loading it back, I got following error messages (I also got exactly the same message whe…
luli7 updated
5 years ago
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There seems to be some kind of bug when loading the annotation table. Seems to be only for the CellPhoneDB resource.
To reproduce:
```python
from pypath import annot
a = annot.AnnotationTable(…
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This is an analysis question. Suppose I have two distinct datasets -- for ease of discussion, suppose one is from brain cells and one is from liver cells -- and I would like to merge them to create…