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Review openjournals/joss-reviews#1643
sbmltoode is a great tool for fast conversion and simulation of ode models, the conversion to json strings is a great feature to have.
The software installs c…
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_From @shalinshah1993 on July 1, 2018 17:38_
This JUnit test needs to be removed since SBSCL doesn't support simulation algorithm with KIASO ID: 0000241. Currently, it throws an error for it.
`01.…
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_From @shalinshah1993 on July 1, 2018 17:27_
This JUnit test needs to be removed since SBSCL doesn't support simulation algorithm with KIASO ID: 0000282. Currently, it throws an error for it.
`01.…
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This JUnit test needs to be removed since SBSCL doesn't support simulation algorithm with KIASO ID: 0000282. Currently, it throws an error for it.
`01.07 13:34:31 WARNS org.simulator.sedml.SedMLSBM…
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This JUnit test needs to be removed since SBSCL doesn't support simulation algorithm with KIASO ID: 0000241. Currently, it throws an error for it.
`01.07 13:34:31 WARNS org.simulator.sedml.SedMLSBM…
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_From @shalinshah1993 on July 3, 2018 15:5_
On running this test, simulation-core cannot find a steadyState solution.
```
03.07 10:38:11 WARNS org.simulator.sedml.SedMLSBMLSimulatorExecutor@202: …
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On running this test, simulation-core cannot find a steadyState solution.
```
03.07 10:38:11 WARNS org.simulator.sedml.SedMLSBMLSimulatorExecutor@202: Required algorithm is not supported. Finding …
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New KISAO terms were added:
- dynamic flux balance analysis: kisao:KISAO_0000499
- DA-DFBA: kisao:KISAO_0000502
- DOA-DFBA: kisao:KISAO_0000501
- SOA-DFBA: kisao:KISAO_0000500
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Information about the KISAO terms must be added
* [x] to manuscript (section introduction and algorithm, list the KISAO terms)
* [x] to the guidelines
* [x] to the figure showing the algorithm (dec…
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Found this issue which might be coming from libSBML 5.15.0
I was testing phrasedml execution and found errors. Realized that the python script generated from sedml is different. Below is what I get…