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shalinshah1993
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SBSCL
The Systems Biology Simulation Core Library (SBSCL) provides an efficient and exhaustive Java implementation of methods to interpret the content of models encoded in the Systems Biology Markup Language (SBML) and its numerical solution.
https://draeger-lab.github.io/SBSCL/
GNU Lesser General Public License v3.0
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Remove old javadocs
#62
shalinshah1993
closed
6 years ago
4
Merge added plotting features with master
#61
shalinshah1993
closed
6 years ago
0
Incorrect graphical output for some sedml tests
#60
shalinshah1993
closed
6 years ago
12
FBA gives incorrect objective_value 0 for bigg models iMM1415 & iRC1080
#59
matthiaskoenig
closed
6 years ago
1
Incorrect output curve for repressilator output #3
#58
shalinshah1993
closed
6 years ago
5
Update index.html and wiki
#57
shalinshah1993
closed
6 years ago
4
Remove 3rd party libs from src/lib folder
#56
shalinshah1993
closed
6 years ago
4
Add support for nested repeated tasks
#55
shalinshah1993
closed
6 years ago
1
Remove org.simulator.examples folder
#54
shalinshah1993
closed
6 years ago
3
Initial merge of working-branch with master
#53
shalinshah1993
closed
6 years ago
0
Cannot reach steadyState for repeated-steady-scan-oscli test
#52
shalinshah1993
closed
6 years ago
8
Remove repeated-stochastic-runs test
#51
shalinshah1993
closed
6 years ago
2
Remove repeated-steady-scan-oscli test
#50
shalinshah1993
closed
6 years ago
11
No output generated for osci-nested-pulse sedml example
#49
shalinshah1993
closed
6 years ago
2
Move the assembly file to the source folder
#48
draeger
closed
6 years ago
4
updated scpsolver
#47
matthiaskoenig
closed
6 years ago
0
Fixes SED-ML simulations with relative model paths
#46
matthiaskoenig
closed
6 years ago
0
Test code for scpsolver and additional tests repressilator
#45
matthiaskoenig
closed
6 years ago
0
Number of points in SED-ML simulations incorrect
#44
matthiaskoenig
closed
6 years ago
2
Partial fix of #24, LPsolver working for single simulation.
#43
matthiaskoenig
closed
6 years ago
0
SBSCL expect one of the Output elements to be a time symbol
#42
shalinshah1993
closed
6 years ago
7
Fix #9, implementing steadystate simulation
#41
matthiaskoenig
closed
6 years ago
0
Unit Tests for SED-ML L1V2 added
#40
matthiaskoenig
closed
6 years ago
0
Fix #37, L1V2 SED-ML examples added
#39
matthiaskoenig
closed
6 years ago
3
Running SBSCL against SBML test suite
#38
matthiaskoenig
closed
6 years ago
0
Example SEDML L1V2 files have errors
#37
shalinshah1993
closed
6 years ago
4
Run SBSCL against the SBML test suite in CI
#36
matthiaskoenig
closed
6 years ago
2
Fix #34, Fix #27, implemented comp support, tests fixed
#35
matthiaskoenig
closed
6 years ago
1
Implement comp support
#34
matthiaskoenig
closed
6 years ago
1
Fixing travis issues due to BiGG models
#33
matthiaskoenig
closed
6 years ago
0
SED-ML FileResolver is broken
#32
matthiaskoenig
closed
6 years ago
3
Postprocessing function for SED-ML files not working any more
#31
matthiaskoenig
closed
6 years ago
3
More work on test cases
#30
matthiaskoenig
closed
6 years ago
0
Update uni-rostock maven dependencies
#29
niko-rodrigue
closed
6 years ago
5
Run FBA tests on all BiGG models
#28
matthiaskoenig
closed
6 years ago
2
Comp example file missing
#27
matthiaskoenig
closed
6 years ago
4
Deleting the dist folder
#26
shalinshah1993
closed
6 years ago
3
Initial work on test cases
#25
matthiaskoenig
closed
6 years ago
0
LPsolver not working on ubuntu linux (libglpkjni_x64.so: undefined symbol: lib_set_fault_hook)
#24
matthiaskoenig
closed
6 years ago
14
Most tests are failing, tests and examples must be refactored
#23
matthiaskoenig
closed
6 years ago
7
Setup/activate CI with travis
#22
matthiaskoenig
closed
6 years ago
3
Fixes the issues in the mvn pom.xml
#21
matthiaskoenig
closed
6 years ago
0
Multiple junit dependencies in project
#20
matthiaskoenig
closed
6 years ago
0
Solver libraries should be separate artefacts
#19
matthiaskoenig
closed
6 years ago
0
add support for COMBINE archives
#18
binfalse
closed
6 years ago
1
Post-processing simulation data for output
#17
shalinshah1993
closed
6 years ago
13
ConstraintTest misses model file
#16
matthiaskoenig
closed
6 years ago
3
CompExample misses model files
#15
matthiaskoenig
closed
6 years ago
3
Maven build
#14
matthiaskoenig
closed
6 years ago
2
glpksolver and lpsolver jars missing from repository
#13
matthiaskoenig
closed
6 years ago
1
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