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The current pipeline is calling an NCBI endpoint for taxonomy information.
I have a potential alternative solution which relies on reading in the tree from a flat file.
I have created a tree i…
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Hi
I am trying to install blobtools and I am finding following issue
```
Python dependencies installed.
[+] Creating BlobTools executable...done.
[+] Downloading samtools-1.5...done.
[+] Unp…
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Dear developer,
The building progress stop in the step " Step 1/2: Performing rsync file transfer of requested files" for more than 24 hours. Is it normal? The command is as follows:
`./kraken2-bu…
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There is a potential bug in the MTSv-summary pipeline that causes an unexpected crash. The bug is reproducible.
**here is the command line:**
srun --mem=64000 python /home/vyf2/MTSv/scripts/MTSv_…
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Hi,
How may I use for recentrifuge the same libraries/db that I already downloaded for centrifuge?
Thanks!
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Hi
I am trying to download the reference set data for standalone KAIJU by following the steps on this [link](https://github.com/bioinformatics-centre/kaiju)
My command is
```
> [root@headnode…
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MTSv-summary.py crashes (see below for traceback message) when it encounters a taxID that is not in it's database. This is going to happen more often once we start adding custom DBs from chromosome a…
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Good day! This has been a really helpful tool in python. I just wanted to ask if it would be possible to use an older version of the taxdump (stored locally, called by update_taxonomy_database). I use…
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Hi, I'm trying to simulate a dataset using CAMISIM but since I am relatively new to metagenomics, I do not have clear understandings on some names. My questions are :
1) I want to use genome with n…