issues
search
khyox
/
recentrifuge
Recentrifuge: robust comparative analysis and contamination removal for metagenomics
http://www.recentrifuge.org
Other
86
stars
7
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
Error code 13?
#53
BZed81
closed
4 months ago
1
taxonomy files for common 16S datasets?
#52
faylward
opened
5 months ago
0
Building nt database - no multithreading at centrifuge-build step
#51
koppk
closed
3 months ago
5
OverflowError when trying passing centrifuge input test
#50
pimarin
closed
8 months ago
3
ImportError: cannot import name 'SequentialSequenceWriter' from 'Bio.SeqIO.Interfaces'
#49
pimarin
closed
9 months ago
9
Issue with nodes/names missing unclassified readID (0)
#48
Electrocyte
closed
1 year ago
1
float deprecated in numpy 1.24
#47
Electrocyte
closed
1 year ago
1
Rextract from Kraken2 output
#46
buiguesj
closed
9 months ago
1
refasplit output files with non-padded zeros
#45
khyox
closed
2 years ago
0
Score understanding
#44
lvelosuarez
closed
9 months ago
1
(question) produced output
#43
arz19893
closed
9 months ago
1
Enhancement: provide control samples in a different directory
#42
khyox
opened
2 years ago
0
abundance table as output
#41
rjsorr
closed
9 months ago
1
interpreting log file for contamination removal
#40
rjsorr
opened
2 years ago
3
definition of contaminat level for removal?
#39
rjsorr
closed
2 years ago
1
Contamination removal help and too large HTML files
#38
rjsorr
opened
2 years ago
11
-k for multiple directories of .krk files?
#37
rjsorr
closed
2 years ago
3
rextract: ZeroDivisionError
#36
shrivastavabhishek
closed
2 years ago
3
Compatibility with Ganon?
#35
rjsorr
closed
2 years ago
5
ZeroDivisionError
#34
jagos01
closed
3 years ago
2
Data from article "Recentrifuge: Robust comparative analysis and contamination removal for metagenomics"
#33
kla44
closed
3 years ago
2
unclassified reads in rextract
#32
comixwang
closed
3 years ago
1
parameter -y/--minscore in rextract
#31
fancyge
closed
3 years ago
10
rextract: zipped fastq files
#30
fancyge
closed
3 years ago
7
min() arg is an empty sequence [error]
#29
JChristopherEllis
closed
3 years ago
4
rextract: add option to get the unclassified reads
#28
khyox
closed
2 years ago
0
rextract: read retrieval failed
#27
webbchen
closed
3 years ago
8
More than 10 mins on a centrifuge result (21.3 MB)
#26
yeli7068
closed
3 years ago
1
The instructions for installing are extremely unclear
#25
zmunro
closed
3 years ago
1
Bug Report: PermissionError: [Errno 13] Permission denied
#24
hansir8
closed
4 years ago
3
KeyError: 'STRAIN'
#23
abomba
closed
4 years ago
5
ZeroDivisionError/Centrifuge
#22
ganiatgithub
closed
4 years ago
3
Update kraken.py to support compressed inputs
#21
XiaoJianfeng
closed
4 years ago
1
update kraken.py to support compressed input
#20
XiaoJianfeng
closed
4 years ago
0
Can command "rextract" support to extract reads from fasta files?
#19
hansir8
closed
4 years ago
3
divided by zero error - fault by using krakenuniq?
#18
BioNij
closed
4 years ago
3
The last stable release of pandas is breaking retest
#17
khyox
closed
5 years ago
0
retest error: "remock: error: one of the arguments -m/--mock is required"
#16
lkmklsmn
closed
5 years ago
2
recentrifuge.rank.UnsupportedTaxLevelError: Unknown tax level section
#15
oatesa
closed
5 years ago
3
Krona generation fails: all seqs are orphans?
#14
wolfgangrumpf
closed
5 years ago
6
No sequence passed the filter error
#13
mhyleung
closed
3 years ago
6
Using centrifuge premade (.cf) database
#12
benkraj
closed
5 years ago
5
retest fails on MacOS
#11
BenKaehler
closed
5 years ago
5
Recentrifuge fails because of new NCBI taxonomy rank: subcohort
#10
khyox
closed
5 years ago
1
CSV output
#9
my-serendipity
closed
5 years ago
3
Excel output with empty columns
#8
blwe
closed
5 years ago
6
Test files?
#7
sminot
closed
5 years ago
2
export PDF from recentrifuge results?
#6
HanZhenZ
closed
5 years ago
2
what the unassgined means?
#5
yeli7068
closed
6 years ago
2
centrifuge db
#4
shlomobl
closed
6 years ago
4
Next