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Hi - thanks for this amazing tool. I am interested to know the exact meanings of the values that are returned in the sequence headers in the a3m files, and wondered whether this was documented anywher…
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I download uniboost10_2016_09 and then extracted the database using `a3m_database_extract`:
```
$ wget http://gwdu111.gwdg.de/~compbiol/uniclust/2016_09/uniboost10_2016_09.tar.gz
$ tar -xzf uni…
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hello while testing hhsuite/3.2.0
I have the following error with addss.pl
```
bigmess:hhsuite/3.2.0 > addss.pl out.a3m
$ cp out.a3m /tmp/dHAvg131b1/A2cQmTLZdi.in.a3m
Filtering alignment to div…
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Hi All!
Thank you for your effort in developing the open-source AF3.
#### Issue Description
I have encountered an issue with the `mmcif_parsing` module related to unresolved residues. It appea…
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Look at the live demo of latest ci3-beta version(it got some error) :-
1. http://a3m.krishnaguragai.com.np/account/validate/resend/guragaikrishna@hotmail.com
2. http://a3m.krishnaguragai.com.np/accou…
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Dear Team,
Thanks for this amazing tool.
I'm trying to generate a Multiple Structure Alignment from a set of pdbs.
I understand that foldseek runs a pairwise structural alignment during the search …
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I am trying to run ColabFold using its singularity image on an HPC but for some of the sequences to predict I run into this error:
2024-02-26 11:42:51,536 Query 1/7: jgi_YarliY64008_1_51878_gm4.453…
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Hello,
we've been trying the updated AlphaFold2_mmseqs2 notebook hoping to be able to use AF-Multimer with a custom MSA. However setting msa_mode to custom seems to be reverting the pipeline to monom…
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```python
Traceback (most recent call last):
File "/ocean/projects/bio210060p/kadyan/openfold-release/scripts/precompute_te
mplate_hits.py", line 224, in
main(args, template_pipeline_runner…
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I installed hh-suite in linux x86_64 and have been successfully using the HHblits function.
I use uniclust30_2018_08 to generate the multiple sequence alignment file .a3m.
Then use .a3m file to se…