-
Dear author,
Thank you for this great tool! I would like to know if the default 80% similarity/coverage threshold is aimed at genus-level pan-genome analysis, as I understand that Roary, a tool pri…
-
I **created a separated issue from #2277 @ryhisner superlative comment and analysis** , Worth to be kept as an issue until confirmation of its findings. @corneliusroemer please don't close this one. …
-
I'm in the process of analyzing some zebrafish neuron transcriptome data. I made a list of genes with ion channel activity based on zfin and a review of the literature. I just compared against the ami…
-
Hi,
ISEScan did a really great job, I have a question about IS associated with antibiotic resistance genes (ARGs). Here is my specific description:
Purpose: Are ARGs on the genome caused by mobi…
-
## Short description of the problem
Hello, I successfully ran `anvi-split` splitting pan.db into "core" and "accessory". Everything worked fine when I ran `anvi-display-pan` on `core/Pan.db`. Howev…
-
**GISAID Query:** Spike_K356T, Spike_R403K, Spike_V445P
**Cov-Spec:** [S:356T,S:403K,S:445P](https://cov-spectrum.org/explore/World/AllSamples/Past6M/variants?aaMutations=s%3A445p%2Cs%3A403k%2Cs%3A3…
-
hi sir, hope you are doing great. Could you please help me with this:
```
(scoary-env) d@dpc:~/Documents/IMSAR/scoary$ scoary2 --genes gene_presence_absence.csv --traits traits.csv --outdir ./caca…
-
according to @myrmoteras, a previous attempt to upload taxodros records was done in 2017.
Suggest to make a list of all pubs related to this attempt.
https://zenodo.org/communities/biosyslit?q=%…
-
Query: G21718C, T22928C, C25714T
Collected: 2023-04-29 and 2023-05-12
I tracked this since 2 seqs because this is pretty much the xbb.1.9.1 equivalent of xbb.1.9.2's eg.5.1 which does have a lar…
-
### **Description**
**Sub-lineage of:** XBB.1
**Earliest sequence:** 2023-2-21, Italy — EPI_ISL_17062976
**Most recent sequence:** 2023-4-4, Italy — EPI_ISL_17434236 and 8 others
**Countries circu…