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Hi Diener,
I tried to run qiime micom build and had the error in below:
![1713936914661](https://github.com/micom-dev/q2-micom/assets/32172984/d6e42b17-d80c-42d6-be7c-0016f232b12b)
version info: …
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Thanks @ksahlin for the great tool. I've been trying to use for a variety of clustering tasks using some amplicon data. I still have some uncertainty on how it is performing as I don't necessarily kn…
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# Issue Report: std::runtime_error (core dumped) with Dorado 0.7.2
## The issue:
I have basecalled my data (short read amplicon data) with several versions of Dorado and keep on having the same (…
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editor preferred term: Roche 454 GS FLX+
alternative terms: 454 GS FLX+
textual definition: is a DNA sequencer which is manufactured by 454 Life Science Corporation and enables pyrosequencing to be …
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Hello,
I am interested to confirm an allele frequency for a SNV in BRAF gene using amplicon sequencing data. The length of amplicon is 271bp, and paired reads are 101X2. So there is a gap between t…
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Fix bugs identified in first anospp production run
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Hello,
When using CRISPRessoPooled with the --alternate_alleles parameter, what goes in the AMPLICON_NAME and AMPLICON_SEQUENCE columns of the description file? Should all alleles go in those colu…
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We need to handle adapter sequences.
Observed behaviour:
1. amplicon N is ok, amplicon N+1 is dropped.
2. reads at the end of amplicon N have adapters.
3. a few bp of adapter are included in the…
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> Taxonomic assignment is the core of targeted metagenomics approaches that aims to assign sequencing reads to their corresponding taxonomy. Sequence similarity searching and machine learning (ML) are…
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