-
Hi Developers,
I am trying to convert my vcf file (created by cuteSV) into avinput using convert2annovar.pl. Here is my script:
perl /home/ucnvlw0/Scratch/bioinfo_tools/Annovar/annovar/convert2ann…
-
Hello. my friend; I annotated the specia chromosome, named chr7_2, and craeted the database only for this chromosome, when run the table_annovar.pl ,
the commod was "table_annovar.pl chr7_2.avinput .…
-
I successfully detected SV using Manta. When deal with the somaticSV.vcf file using Annovar, i encounter with some error.
command line: perl convert2annovar.pl -format vcf4 -allsample -withfreq som…
-
Dear Prof. Wang,
I meet this problem when I use `index_annovar.pl`: Error: unable to find start site from input line . I checked the input file format with awk and find everything is okay. any sugg…
-
Dear authors.
I know that intervar can point out the annovar db to be used internally by editing the confing.ini file, but in reality, this can only change the file to be downloaded. From here, I d…
-
I met the error for running opai_predictor.py using evidence-based model as below.
------------------------------------------------------------------------------------------------------------------…
-
I have 13 lung cancer data, some of which are not normal. I hope you can use this software to find somatic mutations.
I ran this program when the following error occurred, I did not understand the re…
-
Hi, Dr. Wang, I am new to ANNOVAR and want to know if we can customize the filtering process by specifying coverage depth and VAF both using wANNOVAR or ANNOVAR. I didn't find the specific area to spe…
-
Dear Prof. Wang,
I am using ANNOVAR for annotating a set of variants. However, for some of the variants, the tool is not producing output in some of the columns.
Using command:
perl table_annov…
-
Hi there,
1. Does exomiser support only certain vcf file format and above?
2. Exomiser v14.0.0 is not recognizing unstructured key meta-information line with key as “##META” as a valid header line…