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**Describe the bug**
A clear and very-unconcise description: we can't open most multichannel tif's coming out of Fiji, which is frustrating. One goes through the effort to install python-bioformats (…
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I am trying to import a dataset through Ziess Lightsheet Z.1 Dataset (LOCI Bioformats), but it can't seem to recognise there is more than one angle present. The dataset is saved using the names ...G1,…
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It may be useful to allow extra functionality / arguments / control to be injected into the WFs to help debugging, tune per run optimizations, etc.
For example:
log level: bool,
bioformats chun…
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This makes the tools much more flexible and allows integration with KNIME and CellProfiler. It would also be worthwhile to integrate with bioformats
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Hi, I'm enjoying the great capability of the BioFormats, thanks developers & maintainers!
Recently I noticed that the exposure time seems to be parsed incorrectly for some Zeiss CZI files. For exam…
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**Describe the bug**
Looks pretty nasty, and pretty java-y. Will try loading h5's and running the same recipe
```
$ dh5view Documents/BewersdorfLab/DruggedTudors/Snd1_Both_55.tiff
INFO:nume…
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Hi all,
first of all, thanks a lot for bioformats. I'm using it for analyzing confocal laser microscopy data and needed the actual physical pixel size to avoid scale invariance. I added some lines af…
helme updated
6 years ago
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See https://forum.image.sc/t/bad-reading-of-lif-metadata/73038 .
There is already a similar issue https://github.com/ome/bioformats/issues/3513 . Wasn't sure if it should there or a new issue. Just d…
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Hello,
I am trying to install on a Windows 10 machine. I have:
(base) C:\Users\smith6jt\ceceliaDocker>where java
C:\Program Files (x86)\Java\jdk1.8.0_202\bin\java.exe
(base) C:\Users\smith6…
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I tried to do the following, but ran into the exception below. I think this line ( https://github.com/CellProfiler/python-bioformats/blob/master/bioformats/formatwriter.py#L94 ) may be suspect. Howeve…