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Hi,
I installed circlator from here (github) and after installing all the dependencies listed here I ran 'circlator progcheck' but this is the error I keep getting and I have tried a lot of things i…
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Are you already writing an R wrapper package for the tbmate scripts?
We could use it presently for a few thousand new arrays where we need to check chromosome-level copy number differences.
Tha…
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Hi, guys
I'm current running my RNA-seq data through leafcutterMD. Does Leafviz work on outlier results? If not, do you have any method I can use for the visualization?
Best,
Sitong
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I am running the following code:
```
samtools mpileup -uf ref.fasta sorted.bam | bcftools call -c | vcfutils.pl vcf2fq | gzip > Cmar.fq.gz
psmc/utils/fq2psmcfa -q20 Cmar.fq.gz > Cmar.psmcfa
psmc…
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Hi Sir,
Thank you very much for this package!
I recently bumped into a difficulty in gene tree simulation using Phybase.
It failed to simulate gene trees for the third tree in the file but it …
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Hi!
I really value your effort in trying to bring GOEA to python, but please, please, please go all the way. This whole library feels like someone did the hard things (programming the actual functi…
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Hello,
I have been encountering the following error while running the script. It always breaks the same way, independent of the input files.
`user@server: Processing genes ...
1/1361 (0.07%) fini…
rohla updated
4 years ago
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Write a script to get gene-aggregated counts for DB columns in an annotated VCF.
Input:
- An annotated, filtered VCF file output from the script by @nicovbing that implements [Issue 8](https://githu…
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Dear authors,
As part of the Bpexa project of the Bioinformatics Faculty at Hogeschool Leiden, where students collaborate with various organizations and companies to gain their first experience in …
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Is there any plan to add iruby to conda-forge? I plan to add [`sos-ruby`](https://github.com/vatlab/sos-ruby) to conda-forge but found that `iruby` is not currently available in conda, and it is non-t…