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_This task is a submission stream task._
DoD:
- [x] ENA does not send XML documents to validation using XML checklists
- [ ] all related code is remove - e.g. checklist xml model classes
- [ ] all r…
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This corresponds to sampled_tissue in the [GA4GH Biosample](https://phenopacket-schema.readthedocs.io/en/latest/biosample.html).
Add it using the cda_biosample_factory class.
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Discussed during squad-lead call 2020-07-09:
ongoing discussion about biobanks dealing with stem cell and deposition process to Biosample.
Biosample serves Bioschema based JSON-LD
Purpose of recipe…
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I was trying to use `efetch ` to obtain the Attributes of a BioSample record, but I found that for some BioSample records, the Attributes reported in the xml are completely different from those disp…
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A big data source that we will be ingesting multiple studies from in the coming weeks/months is NCBI, and for this we need a generic NCBI study/BioProject to NMDC ingest pipeline/importer/translator (…
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Show the location of each sample collection (instead of having different sized points for the number of samples). Will have to jitter the points, but make sure that they stay inside the correct Sectio…
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Our current MiAIRR submission pipeline is not able to deal with BioSample updates. If a given biosample identifier is already in the NCBI systems and a user needs to update the metadata for that biosa…
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I thought I was missing some metadata in one of our own previously-submitted SRA datasets because it wasn't showing up in the CSV file, but then the SRA admins pointed out that it *does* show up on th…
ressy updated
5 years ago
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Hello,
I would like to report an issue concerning both the BioSample Profile and Type:
BioSample definition in the JSON-LD of [DDE](https://github.com/BioSchemas/bioschemas-dde/blob/main/bioschema…
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Hi Tao,
I realized there is one more piece of metadata that we should update. Assuming it is the same as previous experiments, I think the scRNA-seq biosamples are missing the property "subcellular…