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Hello,
I've been trying to deploy cellxgene-gateway using a python WSGI HTTP server like Gunicorn, since Flask only provides a dev server. I am also using nginx as a reverse proxy to forward client …
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- Users frequently get tripped up thinking metadata are absent when it's the case that it's a constant and thus in the dataset drawer. Even CELLxGENE curators have difficulty finding the these metadat…
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**Collection/dataset this task is for:**
- Title: AdultLungElo - A spatial multi-omics atlas of the human lung reveals a novel immune cell survival niche#236
- Project Short Name: AdultLungElo
- ticke…
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```yaml
author_name (string): # Not in `uns` - but is on Discover. Is it available from `census` - maybe on collection?
author_contact (string, format: email): # Not in `uns`- but is on Disco…
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Thanks to @pablo-gar for the bug report + suggestion.
>For slide-seq seems like a free-for-all based on whatever scale the contributors decide to use in obsm[X_spatial] , which defaults to having th…
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Put together by @liaprins-czi @sidneymbell @colinmegill
Problem: cell render overlap prevents user from quickly gauging cell count and comparison
## Sources of problems
1. Cells are rendered…
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## User stories
- I am a computational biologist with my own data in H5AD or Seurat and I'd like to know which Census cells are the most similar to each of my own cells. I need to know the level of c…
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### Project short name:
MammalLungConnectomeRaredon
### Primary Wrangler:
Ida
### Secondary Wrangler:
Arsenios
### Associated files
* Google Drive: [folder](https://drive.google.com/drive/folders/…
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In line with what the title asks - I've been using CellxGene VIP for downstream analysis, and recently found the newer ExCellxGene for preprocessing.
Is it possible to combine these two tools?
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# Count Data Update
1. The data in nectar is deleted using `swift delete harmonised-human-atlas`
2. The new data is uploaded using:
```bash
swift upload harmonised-human-atlas /vast/proj…