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[CellCNN](https://www.nature.com/articles/ncomms14825) is a powerful new technique to discover rare cell populations that correlate with outcomes variables (eg., Response). It would be powerful to inc…
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The journal article uses purified cancer cells (and does not state what flow cytometry markers were used for sorting by).
> ... with sample-matched, flow-sorted WGS.
The software user manual men…
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We used to rely on the not ISA-compliant special material `Library Name` to define SODAR data collections via the [dna_sequencing assay plugin](https://sodar-server.readthedocs.io/en/dev/metadata_adva…
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- [ ] Look at the [list](https://docs.google.com/spreadsheets/d/1wNtmceBQwZu71gmQ1Z48yqNdV0zNu9WfZJ5IAhoRnMw/edit#gid=845169585) of data types cohorts are collecting and determine existing nextflow/CW…
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Hi everyone,
With my (flowcytometry) data I see that some channels have an optimal Arcsin transformation
that differs from the others. So I actually want to use different transformCofactors.
Has…
SforR updated
5 years ago
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From Nathan:
Hi Ben, David, and Heather,
My name is Nate and I work with Lili at NIST in the flow cytometry consortium. I'm trying to download all the FCS files from WG2 (~2600 files) onto an analys…
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Hi, flow cytometry files from Apogee don't parse with fcs parser.
They (inexplicably) have a bunch of spaces before $P1N in the header, this can be remedied without too much trouble though.
An…
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https://doi.org/10.1038/ncb2709
# Authors
Moignard, V., Macaulay, I.C., Swiers, G., Buettner, F., Schütte, J., Calero-Nieto, F.J., Kinston, S., Joshi, A., Hannah, R., Theis, F.J., Jacobsen, S.E.…
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/MicroStatsLab/PloidyPeaks
Confirm the following b…
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It would be cool to open LMD files (generated for example by Gallios machines).
Its possible to do it in R, so one could in principle reimplement in python or just use the R implementation and call it…