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Greetings sir,
I want to use DeepPurpose for Virtual screening using drugs downloaded from databases with a certain protein.
Can you give me information on how to do this? such as the preparati…
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I used repurpose and virtual_screening functions from oneliner.py. the drugs and the protein were the same in the two cases and I used the pretrained models, however, the results were different.
w…
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I have been reading the spec for weeks now and I can't understand the usage of chains and how are they used differently than the reference frame list for deciding the decodability of a received frame,…
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Hello again,
I am having trouble initializing a model using the code in "Tutorial 2: Training a Drug Property Prediction Model from Scratch for Assay Data". Here are the errors I'm getting:
```
c…
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When using the Quasi-seq encoding on the BindingDB dataset, I ran into the following error:
Drug Target Interaction Prediction Mode...
in total: 1073803 drug-target pairs
encoding drug...
unique…
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Hello, I'm running DeepConv-DTI for toy_examples, but it was getting an error message in process of prediction model.
python predict_with_model.py ./model.model -n predict -i ./toy_examples/te…
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Dear Yunan,
I was wondering what is the output of the DTINet. Is it only AUROC and AUPR?
Can we have Prediction scores of drug–protein interactions (XZYT) as an output? Is it the mean Z-score foll…
ghost updated
4 years ago
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Hello
Our cluster computing group has installed your software via docker on our server like below which directed me to R environment
```
module load singularity/3.2.1
singularity pull antigen.…
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Basically we need to figure out what will replace the following
[lines](https://github.com/PennBBL/qsiprep/blob/master/qsiprep/interfaces/shoreline.py#L214-L221) to accommodate for other models in Di…
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**Describe the bug**
Widgets not displayed in the new layout-based dashboards for all layouts
**Steps/Code to reproduce bug**
```python
from cuXfilter import charts
import cuXfilter
from bokeh…