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options("repos"= c(CRAN="https://mirrors.tuna.tsinghua.edu.cn/CRAN/"))
options(BioC_mirror="http://mirrors.tuna.tsinghua.edu.cn/bioconductor/")
BiocManager::install("ChAMP")
BiocManager::install("C…
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### [Transcription factors](https://www.youtube.com/watch?v=Sd3imcsvXxI)
1. Transcription factor (proteins) control the expression of genes by regulating the process of gene transcription.
![gene-…
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IMPC has paths to images for given genotype+phenotype associations. it would be very cool to display this data. it's available in a rest call like:
http://www.ebi.ac.uk/mi/impc/solr/images/select?…
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**Reported by cmungall on 2008-11-12 13:01 UTC**
The following triads show terms with >1 asserted is_a parent. Ideally each term should have 1 asserted is_a parent/genus. If there are more then the…
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https://docs.google.com/spreadsheets/d/1X870i3NhO7xEhqhLXK4eravNd72x-O-xbrpmlT835nY/edit?usp=sharing
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I use ananse influence to compare two networks successfully but failed when I add a white list of genes. My list goes as follow:
![image](https://github.com/vanheeringen-lab/ANANSE/assets/73478273/98…
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Hello dev team,
Thanks for the amazing tool. I would like to understand the TFinfo and Base GRN files a little bit better.
The TF info file looks like this: What are these factors_direct and fa…
momur updated
8 months ago
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Brought to my attention by Colin Logie
**What is the SO term name and accession?**
intronic_splicing_silencer (SO:0002056)
exonic_splicing_silencer (SO:002058)
Both are children of silencer (SO:…
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## Figure files
https://drive.google.com/drive/u/0/folders/1okzPLhrenRLOsTjQEAiNYaCzXytKCisr
## Panel legends
- [x] a. Overview of experiment design on profiling the entire brain with snmC-seq3 a…
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Can I use ananse to compare TFs networks between disease and normal condition such as aging and young ,or fibrosis disease and healthy control rather than differentiation?