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### Description of feature
Hi Jason,
This workflow looks great and I hope to try it out soon.
If you haven't already considered it, you might want to take a look at incorporating this tool as an a…
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Hi,
Thanks for publishing pufferfish! I was interested in trying it for genome alignment, but when I tried to index GRCh38 it printed out a lot of warnings as if it was interpreting it as a transcr…
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Do the authors have any recommendations for a tool to generate fast bacterial genome alignments that can be input to snp-sites?
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Hi people,
I hope this is the right place to ask my question. If not, than please let me know an alternative. :)
I am kind of new in the world of whole genome alignments. I wanted to create a s…
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Hi,
I would like to thank you for developing such a user-friendly tool with minimal commands. It has greatly simplified the process of creating synteny plots and analyzing genomic alignments.
I am…
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I'm also getting a similar error for bulk-RNA data,
```
> bam_files
MCAO1 MCAO3 MCAO4 Shame1
"../…
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> *[Filament](https://en.wikipedia.org/wiki/Galaxy_filament)* – A large-scale structure in the universe, consisting of a network of galaxies and galaxy clusters interconnected by dark matter and gas. …
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Hello again, Bogdan and Michael,
So far, `make_lastz_chains` has been working great, and the largest successfully aligned was the wheat genome (14.6 Gb). This time, I was asked to see if [the lung…
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Dear all,
I am using RiboDiPA 1.10.0 in R version 4.3.3, and when I run the wrapperFunction (RiboDiPA), it failed in the indexing step:
`Indexing`
`Data/Raw/RiboSeq/IMGN_B17/IMGN_B17_Riboseq_re…
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jcvi.graphics.ribbon module is a modified version of the synteny module which allows plotting of arbitrary alignments and multiple genomic feature tracks. Ribbon plots are not based on ortholog linkag…