-
-
Hi, brianjohnhaas.
I found a small problem when using PASApipeline v2.5.2 (or PASApipeline v2.5.3) via singularity to update my genome annotation.
The log remained me that **fasta** and **pasa binar…
-
Hello, thanks a lot for the great assembler.
I used hifiasm to assmbly three different heterozygous insect genomes using the option "-l 3". For the most heterozygous species I got a big circular sc…
-
Hi,
I am trying to run Bayesembler on a tophat2 (2.0.8) generated file from human K562 whole cell polya+
RNAseq (dUTP protocol):
https://www.encodeproject.org/files/ENCFF412EYU/@@download/ENCFF412EYU…
-
hello,I am trying to use this software to assemble the chloroplast genome, and the result shows INVALID SEED, PLEASE TRY AGAIN WITH A NEW ONE. I want to know where mistake happened, DoIyou have any s…
-
## on which platform/server? (Windows? Windows Sublinux? MacOS? Ubuntu? etc.)
Linux
## MitoZ version?
3.6
## How did you install MitoZ? (e.g. Docker, Udocker, Singularity, Conda-Pack, Conda, o…
-
One thing thet really called my attention was the lack or chloroplast/mitochondrial assembly tools in Galaxy. Recently, Novoplasty was included, but I feel others could be added.
I would recommend:…
-
Different dataset with exactly same parameters set, sometimes I got error message as below, but still get a `contig.fa` file.
`terminate called after throwing an instance of 'std::logic_error' what…
-
Maintain information about the length of contigs and calculated expected coverage, using this, add a -e switch to Newbler (Spades doesn't seem to support expected coverage, but research this further).…
-
Hi,
I'm trying to do a binning with metabat2 using the following config.yaml:
# ------ Samples ------
samples: '*' # specify a list samples to use or '*' to use all samples
# ------ Resources …