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Hi!
I've been running into an issue with the test_gsea() function some weeks ago. The function aborts with the error message "EnrichR website not responding". The website itself is up and running. …
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Hi,
Thank you for this great package. I am trying to run GSEA with custom genesets in a .gmt file. My input gene list contains roughly ~18k genes. For each GSEA the program takes a really long time…
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We're currently building https://github.com/KwatMDPhD/GSEA.jl for various platforms, and have encountered an odd issue. It appears that when we build the redistributable tarball on MacOS 12.2, the res…
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Hi,
I'm working on ubuntu 18.04, java 11 was freshly installed.
I have cytoscape 3.8 with enrichment map plugin install and open.
I use GSEA 4.0.3 to do en enrichment map but the soft doesn't wan…
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Hello,
I installed the GSEA desktop app but have encounter an error on a Mac device running Sonoma 14.0. The error says "GSEA quit unexpectedly". I tried on a different Mac running Ventura 13.5.2 a…
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It seems GSEA Desktop has the same stuttering/refresh rate affecting behavior as described here:
https://github.com/microsoft/terminal/issues/649
For the Terminal app, there is a toggle for forcin…
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Is there any possibility for the package to support collections that don't correspond to the human collections H, C1, ..., C8? For example accessing MH, M1, ..., M8 listed at the link below?
https:…
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Dear YuLab-SMU,
thanks for the great tools for data visualization.
I ran a pre-ranked GSEA search with MSigDB for Cancer Hallmarks using GSEA 4.3.2. Now I would like to use ridgeplot() to visualize…
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Hi. I'm trying to run simplifyEnrichment with enriched pathways from clusterProfiler GSEA function, but it gives me an error message. Below is an example with a similar analysis and the same error. I …