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https://github.com/opentargets/genetics-gold-standards
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We decided to do an interim genetic release using the new orchestration before the big PPP release in December. If we are able to do this in early November (6th?) it will give us 1 month to test and d…
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Hi,
We are currently running a partitioned heritability analysis with our annotation and 10 GWAS. Some of them don't include the frequency of the SNP, and even though I have observed that this inf…
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Hi when I run run_coloc.py:
python summary-gwas-imputation/src/run_coloc.py -keep_intermediate_folder -gwas_mode bse -gwas test1.txt -eqtl_mode bse -eqtl test2.txt -gwas_sample_size 149461 -eqtl_…
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Hi there!
I am trying to mtCojo analysis on Alzheimer's Diseases by conditioning on Small vessel disease by running this:
gcta64 \
--mbfile 1000G_EUR_Phase3.mtcojo_ref_data.txt \
--mtcojo-file…
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Hello,
In line 233 of [`gwas.jl`](https://github.com/OpenMendel/TrajGWAS.jl/blob/main/src/gwas.jl#L233), the assumption is that the first column of the PLINK `.fam` file contains the ids - however,…
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The submission and sumstats need to be removed as the user has requested it to be retracted
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GWAS tool:GAPIT3, can you help me to make a docker or singularity image for this tool?
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Dear Team,
I calculated partition heritability for ATAC seq peaks by using 106 GWAS sumstats.
For example: for "PASS.Schizophrenia.Trubetskoy2022 GWAS sumstats", I have 98 categories for peaks. I …
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American beech GWAS:
https://bmcgenomics.biomedcentral.com/articles/10.1186/s12864-017-3931-z