adamsardar stoneTrees issues

adamsardar / stoneTrees

Integrating 'omics data with biological networks by solving Steiner Tree problems

Mozilla Public License 2.0

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issues

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Restore working package on CI

#28 adamsardar closed 2 years ago
0
Move to using = rather than <-

#27 adamsardar closed 3 years ago
0
Update nodeCentricSteinerForestProblem-class.R

#26 InesdeSantiago closed 3 years ago
0
Problem with installation (ERROR: unable to collate and parse R files for package ‘stoneTrees’)

#25 InesdeSantiago closed 3 years ago
0
Migrate to github actions

#24 adamsardar closed 2 years ago
1
Contrast against other Steiner solving packages

#23 adamsardar opened 3 years ago
0
APSP fix and new method to track the number of connectivity contstraints cycles

#22 JulieBorgel closed 3 years ago
2
Add connectivity constraints preemptively?

#21 adamsardar opened 4 years ago
1
Allow for reproducible steiner forest sampling

#20 adamsardar closed 3 years ago
0
Change the default number of bootstraps and/or iterations in Steiner Forest

#19 adamsardar opened 4 years ago
1
More explicit options to set nThreads

#18 adamsardar opened 4 years ago
1
Is there a correlation between degree and beta-uniform score in MWCS?

#17 adamsardar opened 4 years ago
0
GWAS integration?

#16 adamsardar opened 4 years ago
1
Look at using rmpk or ompr for the MILP generation

#15 adamsardar opened 4 years ago
1
No rcplex

#14 adamsardar closed 4 years ago
0
Use rbinom rather than sample for bootstraps

#13 adamsardar closed 4 years ago
0
Explore the use of purr's functions

#12 adamsardar opened 4 years ago
3
Simplify $identifyMultipleSteinerSolutions

#11 adamsardar opened 4 years ago
0
Remove Rcplex and instead work with cplexAPI

#10 adamsardar closed 4 years ago
2
Include CBC as a supported solver

#9 adamsardar closed 4 years ago
18
bugs and minor changes

#8 JulieBorgel closed 4 years ago
1
Add pkgDown website once documentation is stable

#7 adamsardar closed 4 years ago
0
CRAN or Bioconductor submission?

#6 adamsardar opened 4 years ago
2
Revisit object design and inheritance

#5 adamsardar opened 4 years ago
2
Document R6 objects more thoroughly

#4 adamsardar opened 4 years ago
2
Fix indentation

#3 adamsardar closed 4 years ago
0
Add CI testing

#2 adamsardar closed 4 years ago
1
Break node-separator routine into a seperate function

#1 adamsardar opened 4 years ago
0