-
Hi,
thank you for providing such a fantastic tool! It’s exactly what I needed for integrating GWAS summary data with scRNA-seq data.
While using this tool, I encountered a question regarding th…
-
Dear creators of nf-gwas-pipeline,
First a praise: I was looking for such a long time for a nice and well documented GWAS pipeline. I must say I've tried quite a few and there was always an issue so…
-
From Beth:
I have been thinking about how to cater the current GWAS for Anvil. Here are my thoughts:
Currently, biggest difference between these GWAS tutorials we are creating is how to navigate the…
kozbo updated
3 years ago
-
Hi there!
I am trying to mtCojo analysis on Alzheimer's Diseases by conditioning on Small vessel disease by running this:
gcta64 \
--mbfile 1000G_EUR_Phase3.mtcojo_ref_data.txt \
--mtcojo-file…
-
Hi GWAS Team,
We are in the process of reviewing the logic of certain steps of our pipelines. For this, I need some help from you to better understand the data I could download from the GWAS Catalo…
-
From Beth:
I have been thinking about how to cater the current GWAS for Anvil. Here are my thoughts:
Currently, biggest difference between these GWAS tutorials we are creating is how to navigate th…
-
After some discussion the bcf format is moving to a slightly modified vcf format (see https://github.com/MRCIEU/gwas_harmonisation/issues/15 for info)
I have made a new branch in this repository ca…
-
I'm running into an error when running `munge_sumstats.py` on a GWAS dataset with multiple columns for variant ID (i.e. RSID and SNPID with rsID and chromosome-position-ref-alt, respectively). Even if…
-
I think to get a sense of how the package will flexibly deal with multiple data sources we do need to start to look at alternative data sources to figure out how that will be handled.
I would sugg…
-
Hello,
I'm experiencing problems running VARI3 with my GWAS dataset, the following errors are:
```
127087 MB RAM detected; reserving 63543 MB for main workspace.
Allocated 47657 MB successful…