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Hi,
Thank you for developing a useful tool.
I am confused about the output of sEV_recognizer function. The n_obs of raw_SEVtras.h5ad file has 1129,431 lines, nearly 10 times more cells than my orig…
HZT55 updated
2 months ago
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**"s4d8_subset_gex.h5ad" file in the clustering section**
Hi, I was going through the clustering chapter and was confused about the file that is read to the adata. So I have 2 questions:
**1 - D…
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Hi,
I have a question regarding the input to ENVI. I read in one of [your comments in another issue](https://github.com/dpeerlab/ENVI/issues/4#issuecomment-1997787689) that "Also, make sure the dat…
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Hi developer.
I tried to upload my h5ad file to the spateo_viewer, and it said Permission denied.
PermissionError: [Errno 13].
Do you have any way to solve this problem?
Thank you so much…
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### Please make sure these conditions are met
- [X] I have checked that this issue has not already been reported.
- [X] I have confirmed this bug exists on the latest version of anndata.
- [ ] (optio…
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Hello there,
Thanks so much for developing this useful tool. I am trying to convert scanpy h5ad to seurat rds, using
`scdior -i ./adata.h5ad -o ./adata.rds -t seurat -a RNA`
I got the error:
`.…
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Hi, I'm getting an error when I run the code to convert the h5ad file. I've checked my h5ad file and found no problems. What is causing the error and is there any way to fix it?
sceasy::convertForm…
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I came across a previous issue #436 and couldn't get the dask solution working with my application, so I came up with a somewhat hacky solution to reading only the desired fields from an h5ad into an …
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Exactly related to #138
For SeuratDisk Team,
So after some exploration, I believe the categorical data in the "obs" of an H5AD file works in a way by saving zero-based integer values in the 1D H…
mvfki updated
3 months ago
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Hi developer.
I'm wondering how to transfer the xenium dataset to anndata which could be used for 3D visualization.
And also for the example, where we can downalod the "E7-9h_cellbin_h5ad.zip"