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- [ ] Chose only histidine and Tryptophan pathways from central database (several enzymes by pathway)
- [ ] Chose separately these families and genera: Ornithinimicrobiaceae, Streptosporangiaceae, St…
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[Compilation of Fault-Tolerant Quantum Heuristics for Combinatorial Optimization](https://arxiv.org/abs/2007.07391) gives detailed costings and constructions of oracles for useful optimization problem…
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### Description
* **Goal:**
* **Why here?:**
\*
1.
In Social Choice/Epistemic Democracy there is a concept called Objective Truth, that refers to the “right” allocation that should ideally b…
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Following up on a discussion I had with @nickp60 earlier on whether or not we should retune the `bbduk` parameters during trimming (given that we have some reads that look like adapter/empty sequence …
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I tried the following query:
`INSERT INTO vec_items(rowid, embedding) VALUES (?, ?) ON CONFLICT(rowid) DO UPDATE SET embedding = excluded.embedding;`
and got:
`UPSERT not implemented for virt…
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I ran spades.py on my reads to have a plant genome assemby which has an estimated size of 600M. I am providng a memory of 998G but it was stuck at subclustering hamming graph for 2 days. I have Nanopo…
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machine: disk 512GB, RAM 750GB, 16 cores
dataset: 23Gb, 15GB
commands that I ran for 23Gb dataset:
spades.py -o $OUT_DIR/$name --only-error-correction -s $i -m 500
and here is the log:
```
…
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Hi,
I made a docker with zUMIs, and I got past the prior error, but now getting this error. I'm running it as a singularity image, so I know that disk space is not an issue. Any suggestions?
```
[1…
gevro updated
3 months ago
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I have been trying HDBSCAN to cluster text data and i am very happy with the results. However i am fairly new to ML and Python. I was using the default metric for a while and after some preliminary re…
armsp updated
6 years ago
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Hi @chhylp123
I have 2 assemblies, one with only HiFi data (50x) and HiFi (60x) + OmniC (30x). I was expecting with addition of OmniC, hamming error should improve compared to HiFi only assembly. …