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Dear authors,
I'm trying to scaffold a huge genome (~32Gbp). We produced about 2 billion valid Hi-C reads. LACHESIS runs through, and generates 14 clusters that totally make sense (judging by conti…
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Hi, I want to use TADbit to detect TADs, the TADbit detect 25,521,413 valid read pairs only ,but other tools such as HiCExplorer could detect 58949201 read pairs using the same data, I think mayb…
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Rules like [this for raxml](https://github.com/galaxyproject/tpv-shared-database/blob/957d87883dde0c32f155da7634fb518b695a8866/tools.yml#L2277) allocate additional cores but because most people set `m…
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Hello,
When I try to install the program, I encounter the following error :
Collecting scandir; python_version < "3.5" (from pathlib2>=2.2.0; python_version < "3.6"->pytest>=2.8.1->HiCAssemble…
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Hello,
I am having problems using .hic files generated using Juicer v2.0
Specifically:
UnicodeDecodeError: 'utf-8' codec can't decode byte 0xaf in position 1: invalid start byte
This could …
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Hi @joachimwolff,
I always impressed by this powerful tool :)
Recently I was trying to use hicAggregateContacts parameter to see the long-range interaction (for specific regions) between chromosom…
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hello Tariks,
I run the code : peakachu train -r 10000 -p maizeB73.allValidPairs_10000.hic.cool -O models -b maizeB73.10kb.bedpe ,
my maizeB73.allValidPairs_10000.hic.cool comes from hicpro'allv…
frwjo updated
9 months ago
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Hi,
I have several questions relevant to `hicCorrectMatrix correct`.
1. The coverage histogram of my data showed that the count bins are not well distributed and didn't strictly follow the Gauss…
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Hey,
I want to convert .validpairs file downloaded from GEO to .hic file. I did it using auto command from fanc. Though it generated files with many resolutions, but when I tried to use these files f…
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The version of HiCExplorer in PyPI is [outdated](https://pypi.org/project/HiCExplorer/).
Could you please update it?
It would make installation using pip easy.