tariks peakachu issues - Githubissues

tariks / peakachu

Genome-wide contact analysis using sklearn

MIT License

57 stars 9 forks source link

issues

Newest

Newest Most commented Recently updated Oldest Least commented Least recently updated

IndexError: column index (15100) out of range

#25 frwjo opened 6 months ago
1
No module named 'straw'

#24 SSHH007 opened 6 months ago
3
Peakachu does not work with .hic files generated with juicertools_2.20.00

#23 varunkas closed 8 months ago
7
dtype error

#22 dwbl101 opened 9 months ago
4
Error with cooler files from 4DN

#21 WangJiuming closed 1 year ago
2
numpy error for peakachu pool

#20 kainblue100 opened 1 year ago
1
OS error

#19 TakatoG opened 1 year ago
0
diffPeakachu with newer models

#18 ViriyaK opened 1 year ago
4
Question regarding fig. 2 in your paper

#17 zhyanlin opened 2 years ago
2
Error with available model file

#16 maharshi14 closed 2 years ago
3
The predicted location information of the loop file exceeds the size of the chromosomes of the genome

#15 wbszhu closed 2 years ago
2
How to evaluate the detected loops?

#14 frankchen121212 closed 2 years ago
2
Error when running with pre-trained 90% model

#13 Yulong663 closed 3 years ago
3
How to define sample-specific loop

#12 yanchunzhang opened 3 years ago
0
MemoryError on CentOS 7.6 Cluster

#11 CriticalSci closed 3 years ago
3
How to transform our HiC matrix data or processed reads to the training .bedpe file.

#10 Yulong663 opened 4 years ago
7
How to find annotation files of other matrix files from 4DN

#9 Dweson opened 4 years ago
1
How to get the .bed files relative to the matrix and how to get the picture similar to example you list

#8 Dweson opened 4 years ago
5
How can I get the picture with 'black spots'(which means loops) with juicebox

#7 Dweson closed 4 years ago
0
if k != chromname

#6 YvesXu closed 4 years ago
1
loops at resolutions other than 10kb

#5 oriolfornes closed 4 years ago
1
Improve readability in writeBed. Pep8

#4 zhqu1148980644 closed 4 years ago
0
Improve readbility in writeBed

#3 zhqu1148980644 closed 4 years ago
1
peakachus score_chromosome question

#2 sabrsyed closed 4 years ago
7
more sophisticated documentation

#1 XiaoTaoWang closed 4 years ago
0