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Hi, thanks for sharing this repo.
I have encountered a bug where I get different results depending on the order in which I parse two names. Specifically, I would like to parse:
`DPB10401` -> `HL…
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Hi all,
I run
```
user% ./NERVE.sh -epp False -vir True -rz True -p1 UP000000625 -wd /Users/ab/Applications/NERVE/docker/nerve/workdir/ecoli -g n -m True
```
and got :
```
wrote config …
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_Issue [HLA-1236](https://jira.stsci.edu/browse/HLA-1236) was created on JIRA by [Rick White](https://jira.stsci.edu/secure/ViewProfile.jspa?name=rlw):_
I noticed a couple of cases where HAP-SVM co…
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The 4th field of HLA nomenclature includes:
1. intron variants
2. UTR variants
Due to complexities in the typing of UTRs and also/especially the dynamic nature of their definition in the IMGT/HLA…
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_Issue [HLA-1249](https://jira.stsci.edu/browse/HLA-1249) was created on JIRA by [Steve Goldman](https://jira.stsci.edu/secure/ViewProfile.jspa?name=sgoldman):_
The first task to solving HLA-1234 i…
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The multiple sequence alignments in the `data` folder are almost 2 years old. Since then, many new alleles have been discovered and recorded in IMGT/HLA and existing alleles have been renamed or impro…
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Hi,
I'm wondering how I can make a `--quilt_hla_supplementary_info_file` for hg19. I guess I can liftOver the file provided in the Github repo, but I hope to add more genes, like `c('A','B','C','DPA1…
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Dear author, thank you for providing such an excellent HLA typing tool.
HLAscan has been working in our research all the time, but recently encountered problems in a batch of WES data.
On these …
b-niu updated
7 months ago
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Hi,
OptiType has been reported as one of the best performing tool for genotyping HLA Class I alleles, but unfortunately, OptiType does not type HLA Class II alleles, which may limit its clinical util…