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Hello
I am trying to install prokka on my new mac MacOS BigSur M1. I tried just installing miniconda and installing with
conda install -c conda-forge -c bioconda -c defaults prokka
it runs thi…
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The attached hmm and target sequence (both with .txt extension to force github to allow them to be uploaded) pair to yield a >9Kb long gap in an alignment.
[target.fa.txt](https://github.com/EddyR…
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Hi,
I installed phables 1.3.2 via conda recently, following the instructions in the docs. `phables install` and `phables test` both finished successfully. However, the `marker.hmm` file, located in…
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# Improve the performance assessment of prot-scriber generated Human Readable Descriptions (HRDs)
So far we identified the following list of candidate words that should not be used as the reference…
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Hello,
I'm using eggnog-mapper for a metagenomic pipeline with hmm searches.
For optimization, i'm using "--usemem" parameter, however the process seems to be stuck in "Waiting for server to bec…
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Hi,
I was trying to convert the stk output file in a hmm, however, I got an interesting result with hmmbuild.
It seems like there are duplicated sequences within the same alignment (coordinates), th…
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Afternoon,
While running the following command :
```
singularity exec -B $PWD/interproscan-5.68-100.0/data/:/opt/interproscan/data \
-B $PWD/output:/output \
-B $PWD/temp:/temp \
-B $PWD:/i…
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Bioconda does not currently support recipes for Apple computers with an ARM/M2 processor (osx-arm64). HMMER 3.4 adds compatibility http://cryptogenomicon.org/hmmer-3-4-release.html, butolder versions…
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Hi,
After installing InterProScan, I put the command $ python3 initial_setup.py, and the error was displayed as following.
Checking any hmm models that need indexing ... this may take a few minu…
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Hi,
I get an error while trying to run interproscan at the step "stepPantherRunHmmer3" and it seems the problem is with the HMM file.
```
[doutree@plop] input $ ml InterProScan
[doutree@plop] in…