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Dear author,
As the title, is there any function in CIRI-long to catch isoforms' counts ?
Or how could I get isoforms' counts instead of circRNA-genes' counts ?
Thanks a lot.
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Hi, I aligned the transcript to the reference genome, and based on the coverage of reads, I found two alternative splicing events. However, the GTF file expanded by IsoQuant shows only one transcript …
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Hi,
When I get a geneAnnotation.bed file from ZOONOMIA, it's difficult for me to obtain the isoforms.txt file for the query species. So, I tried to extract the information from orthologsClassificat…
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e.g. Alternative splice isoforms for TP53 Gene
UniProtKB/Swiss-Prot:
[P04637-1](https://www.uniprot.org/uniprot/P04637#P04637-1) [P04637-2](https://www.uniprot.org/uniprot/P04637#P04637-2) [P04637-3…
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Hi there,
Our annotators have noticed that there is no way to view many isoforms in the user-created annotations track at a normal zoom level if the number of isoforms exceeds the dimensions of your …
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In many cases, the large number of transcript isoforms is a bit overwhelming. The reducedRepresentation displayMode is nice but it just draws a block instead of any exon-intron structure
A nice ref…
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**Are you using the latest release?**
1.8.13
Hi there,
I am using funannotate to convert a gff3 to a .tbl file, then to convert the .tbl file to a .gbk file, and then to spit out the transcript…
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Add a column to the table output of `annotate_orf_isoforms` with the Kozak sequence score computed. Likely to use `ORFik::kozakSequenceScore`
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