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The sci-zurich dataset does not originally have SC segmentations. In order to train a [region-based nnUNet](https://github.com/MIC-DKFZ/nnUNet/blob/master/documentation/region_based_training.md) model…
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We (I and @kiristern) went over the entire dataset to check and correct existing GT lesions as it was found out during model training that the dataset was missing some lesions.
All the corrections…
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貼吧活動:(請查閱 [SARS-CoV-2 Timeline by 2020.02.21](https://github.com/agorahub/_meta/blob/agoran/theagora/sari/Memorandum_2020-02-21_SARS-CoV-2-Timeline_Nathan.pdf?raw=true), by Nathan :cloud: )
- Colla…
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This issue aims to open a brief discussion about the type of registration method to be used for co-registering the axial and sagittal T2w scans as a prerequisite before training a multichannel model. …
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This issue will collect all feedback submitted via the feedback form at the end of each tutorial
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Results have been [aggregated](https://nbviewer.jupyter.org/github/bebatut/galaxy-training-m…
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Hi muscat team,
Thanks for such a great DEGs package. It's so fast and gets more exciting results than other methods.
I am working on single-cell data. When I ran grouped samples, everything we…
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Create a script and/or SHELL syntax (inspiration from https://github.com/ivadomed/model_seg_ms_mp2rage/issues/56#issue-1501621673) that does:
- loop across subjects
- denoise the T2w image
- loads …
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Working branch on git-annex: `jca/update-groundtruth`.
P091 and P167 do not have manual MS lesion segmentation file. They should exist (even if they are empty).
# Batch commands
Run in folder…
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In this image (from P010):
![image](https://user-images.githubusercontent.com/2482071/145615091-4e52117b-b831-444f-9406-49ffcc235d9c.png)
One rater (red) segmented lesions above the medulla oblong…
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**Submitting author:** @ayuei (Vincent Nguyen)
**Repository:** https://github.com/Ayuei/DeBEIR
**Branch with paper.md** (empty if default branch): paper
**Version:** v0.0.1
**Editor:** @arfon
**Review…