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Hi,
I am trying to get the taxonomy of several contigs present in a multi-fasta file, but I'm having some issues with the `easy-taxonomy` command, as it is has not completed the assignment of about …
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Hi,
I have a little over 1 million proteins from a metagenome I would like to perform an easy-search on Alphafold/UniProt50. I am running foldseek on Google Cloud so I am fairly flexible on CPUs an…
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## Expected Behavior
I try to use easy-linsearch and linsearch but both have same issue : empty files
First, I have try easy-linsearch with the line :
"$ mmseqs easy-linsearch /work/cbelliardo/6-en…
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Hi,
I'm getting an error when trying to blastn sequences vs NT DB. I also tried to just run the last convertalis command on a different computer and saw it crashed after getting to ~2TB of RAM usag…
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I'm looking at treatment-for edges in CIDO: http://purl.obolibrary.org/obo/CIDO_0000012
there are two edges:
![image](https://user-images.githubusercontent.com/50745/90588502-9df76d80-e190-11e…
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Hello.
MMSeq2 dies after write error, The shell output is below. Anyone knows why this happens?
Thanks,
Torsten
___________________
Create directory tmp
search kelp_database uniref50 res…
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I've bumped into what appears to be a bug when using `easy-search` with the `--greedy-best-hits` flag and `--cov-mode 1 -c 1`, where hits containing targets that fully cover the query are being filter…
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Dear Foldseek Team:
Thank you for this amazing tool and careful maintenance! I'm using Foldseek to cluster a number of PDB files, but it ran into trouble under some specific circumstance.
## Exp…
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hi,
i am trying to test conterminator on a very simple file to start, but it freezes at rescorediagonal stage.
When i use example files dna.fas and dna.mapping, everything is fine !
here is my fa…
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## Expected Behavior
Throw an exception or end the program if the number of reads is small that it will fail to be assembled.
## Current Behavior
Entered an infinite loop running on 24 threads (D…